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[181436_at]

Description F40A3.2 /REP_DB=WormBase Gene ID /WP=CE10144 /TR=O16265 /GB=AAB65320.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 26      6grp_high1_10_10 > 62      4grp_highest_8_8 > 31      4grp_high_8_8 > 13      6grp_highest_nonorm > 36      6grp_total > 62      4grp_total > 11      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2292
1 2 3 4 range
A 2078.4
(-1.9)
P 		2319.3
(-0.2)
P 		1924.8
(-3)
P 		2781.8
(3)
P 		857
B 2373.6
(-1.6)
P 		2054.6
(-2.8)
P 		2014.8
(-3)
P 		3509
(3)
P 		1494
C 2007.5
(-2.6)
P 		2188.2
(-2.1)
P 		1857.7
(-3)
P 		4149.9
(3)
P 		2292
avr 2153.2
(-2.1) 		2187.4
(-2) 		1932.4
(-3) 		3480.2
(3) 		1548

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3760
1 2 3 4 5 6 range
A 2800
(-3)
P 		3591.8
(-1.4)
P 		5760.6
(3)
P 		5250.7
(2)
P 		3046.9
(-2.5)
P 		2886.8
(-2.8)
P 		2961
B 2356.5
(-3)
P 		3600.1
(-1)
P 		6116.7
(3)
P 		4611.7
(0.6)
P 		3449.3
(-1.3)
P 		2933.4
(-2.1)
P 		3760
C 2876.1
(-2.7)
P 		3880.8
(-0.6)
P 		4520
(0.7)
P 		5662.5
(3)
P 		2715.4
(-3)
P 		3381.2
(-1.6)
P 		2947
avr 2677.5
(-3) 		3690.9
(-0.8) 		5465.8
(3) 		5175
(2.4) 		3070.5
(-2.2) 		3067.1
(-2.2) 		2788
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 350
1 2 3 4 range
A 756.8
(3)
P 		503.4
(-1.3)
P 		503.2
(-1.4)
P 		407.2
(-3)
P 		350
B 756.9
(3)
P 		507.5
(-2.2)
P 		466.9
(-3)
P 		747.8
(2.8)
P 		290
C 664.5
(0)
P 		629.1
(-3)
P 		647.5
(-1.4)
P 		699.7
(3)
P 		71
avr 726.1
(3) 		546.7
(-2.8) 		539.2
(-3) 		618.2
(-0.5) 		187

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 969
1 2 3 4 5 6 range
A 516.2
(-3)
P 		1277.4
(2.6)
P 		1254.5
(2.4)
P 		1331.7
(3)
P 		919.4
(-0)
P 		702.9
(-1.6)
P 		816
B 819.9
(-3)
P 		1198.3
(0.4)
P 		1485.3
(3)
P 		1221.5
(0.6)
P 		1401.4
(2.2)
P 		1093.9
(-0.5)
P 		665
C 1066
(0.7)
P 		1184.1
(3)
P 		1150.4
(2.3)
P 		1138.7
(2.1)
P 		878.7
(-3)
P 		1131.9
(2)
P 		305
avr 800.7
(-3) 		1219.9
(2.1) 		1296.7
(3) 		1230.6
(2.2) 		1066.5
(0.2) 		976.2
(-0.9) 		496
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181436_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11986
Sequence Type Exemplar sequence
Representative Public ID F40A3.2 NCBI
Target Description F40A3.2 /REP_DB=WormBase Gene ID /WP=CE10144 /TR=O16265 /GB=AAB65320.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072630(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072630 NCBI Caenorhabditis elegans F40A3.2 (F40A3.2) mRNA, complete cds. 11/11 None
SNAP00000025356 ENSEMBL cdna:SNAP chromosome:CEL140:V:7881525:7883868:1 11/11 None
GENEFINDER00000025364 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7881525:7883868:1 11/11 None
F40A3.2 ENSEMBL cdna:known chromosome:CEL140:V:7881506:7883976:1 gene:F40A3.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7881525-7883869(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F40A3.2
Entrez Gene 179169 Entrez gene
SwissProt O16265 EMBL-EBI
WormBase CE10144 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB65320 Hypothetical protein F40A3.2 [Caenorhabditis elegans] ref|NP_505031.1| F40A3.2 [Caenorhabditis elegans] 1.0E-107
blast CAE73160 Hypothetical protein CBG20553 [Caenorhabditis briggsae] 7.0E-93
blast CAE73160 Hypothetical protein CBG20553 [Caenorhabditis briggsae] 1.0E-91
blast CAE69913 Hypothetical protein CBG16269 [Caenorhabditis briggsae] 1.0E-25
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505031.1 1 119-141
F40A3.2 1 119-141
SNAP00000025356 1 119-141
GENEFINDER00000025364 1 119-141
Sequence
Target Sequence 
>C. ELEGANS:181436_AT
gaaggtgaccgctgttactgtatcgaaggctggacgggtacactatgccatcgcaaaatg
tactgttctggattcgaacgccttcagaatggaagttgtattgagtgtgaactcggatgg
gcgggtaccgattgtgacatcattgactgtcatggaaatggaatgccaaattatgacttg
accgaatgcacgtgtaccgtaccatattctggaaagtattgcgagattgctgacactaaa
gatatttacaaatggtacaataacttcacgtcaagcatcggtcctattggaattttaaca
attattccattggctttgatttatatgtgttgtgagcactttgccaagaagcgtcagctc
cgtcgtgttgagcaacatctaaatggtgtctatattaccaccggaagaaaacaggttgac
aaaatgcttgtcaagggtctccttgaagcatccgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGGTGACCGCTGTTACTGTATCG 343 335 103 Antisense
AGGCTGGACGGGTACACTATGCCAT 520 53 129 Antisense
GTACTGTTCTGGATTCGAACGCCTT 313 459 162 Antisense
GTGTGAACTCGGATGGGCGGGTACC 34 483 207 Antisense
GCGGGTACCGATTGTGACATCATTG 435 293 223 Antisense
GACTTGACCGAATGCACGTGTACCG 418 371 277 Antisense
GCACGTGTACCGTACCATATTCTGG 203 313 290 Antisense
TAACTTCACGTCAAGCATCGGTCCT 587 639 363 Antisense
CTTTGCCAAGAAGCGTCAGCTCCGT 635 215 441 Antisense
GTCAGCTCCGTCGTGTTGAGCAACA 674 465 455 Antisense
CAAGGGTCTCCTTGAAGCATCCGAC 123 185 534 Antisense
Sequence Source Affymetrix Proprietary Database