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[181435_at]

Description C48B6.8 /REP_DB=WormBase Gene ID /WP=CE27870 /TR=O01514 /GB=AAK68257.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 22      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 61.6
(3)
M 		20.7
(-3)
A 		29.2
(-1.8)
A 		37
(-0.6)
A 		41
B 73.5
(2.9)
P 		44.8
(0.5)
A 		4.3
(-3)
A 		74.2
(3)
A 		70
C 57.9
(0.4)
A 		21.8
(-3)
A 		40.2
(-1.3)
A 		86.3
(3)
A 		65
avr 64.3
(2.8) 		29.1
(-2.3) 		24.6
(-3) 		65.8
(3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 92.2
(3)
P 		46
(-1)
A 		41.8
(-1.4)
A 		70.3
(1.1)
P 		56
(-0.1)
M 		23.2
(-3)
A 		69
B 77.5
(3)
P 		67.8
(1.2)
A 		45.2
(-3)
P 		51.7
(-1.8)
A 		50.9
(-1.9)
M 		55.5
(-1.1)
A 		32
C 34.8
(-3)
A 		48.1
(-0.5)
A 		66.3
(3)
M 		50.8
(0)
A 		48.7
(-0.4)
P 		46.5
(-0.8)
A 		32
avr 68.2
(3) 		54
(-0.2) 		51.1
(-0.9) 		57.6
(0.6) 		51.9
(-0.7) 		41.7
(-3) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 22.4
(3)
M 		4.5
(-3)
A 		7.6
(-2)
A 		5.4
(-2.7)
A 		18
B 23.5
(3)
P 		11.1
(-0.3)
A 		1
(-3)
A 		15.8
(0.9)
A 		23
C 19.2
(3)
A 		6.3
(-3)
A 		14
(0.6)
A 		14.6
(0.9)
A 		13
avr 21.7
(3) 		7.3
(-3) 		7.5
(-2.9) 		11.9
(-1.1) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 17
(2.6)
P 		16.4
(2.3)
A 		9.1
(-1.3)
A 		17.8
(3)
P 		16.9
(2.6)
M 		5.7
(-3)
A 		12
B 27
(3)
P 		22.6
(1.4)
A 		11
(-3)
P 		13.7
(-2)
A 		20.7
(0.6)
M 		20.7
(0.6)
A 		16
C 12.9
(-0.6)
A 		14.7
(1)
A 		16.9
(3)
M 		10.2
(-3)
A 		15.8
(2)
P 		15.6
(1.8)
A 		7
avr 19
(3) 		17.9
(2) 		12.3
(-3) 		13.9
(-1.6) 		17.8
(1.9) 		14
(-1.5) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181435_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1561
Sequence Type Exemplar sequence
Representative Public ID C48B6.8 NCBI
Target Description C48B6.8 /REP_DB=WormBase Gene ID /WP=CE27870 /TR=O01514 /GB=AAK68257.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059572(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059572 NCBI Caenorhabditis elegans C48B6.8 (C48B6.8) mRNA, complete cds. 11/11 None
SNAP00000029808 ENSEMBL cdna:SNAP chromosome:CEL140:I:6925882:6929836:-1 9/11 None
GENEFINDER00000029820 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6925882:6930985:-1 9/11 None
C48B6.8 ENSEMBL cdna:known chromosome:CEL140:I:6925720:6931087:-1 gene:C48B6.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6925650-6931733(-) 98.42 100.0
Public Domain and Genome References
Gene Title
Ensembl C48B6.8
Entrez Gene 183572 Entrez gene
SwissProt O01514 EMBL-EBI
WormBase CE32166 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.5696.1.S1_AT similar to parathyroid hormone-responsive B1 gene isoform 2 cfa
CANINE_2:CFAAFFX.5696.1.S1_S_AT similar to parathyroid hormone-responsive B1 gene isoform 2 cfa
CANINE_2:CFAAFFX.5700.1.S1_AT similar to parathyroid hormone-responsive B1 gene isoform 2 cfa
DROSOPHILA_2:1641154_AT dm
DROSGENOME1:147619_AT dm
HG-U95AV2:37548_AT parathyroid hormone-responsive B1 hs
HG-U133A_2:37549_G_AT parathyroid hormone-responsive B1 hs
HG-U133_PLUS_2:37549_G_AT parathyroid hormone-responsive B1 hs
HG-U133A:37549_G_AT parathyroid hormone-responsive B1 hs
HG-U95AV2:37549_G_AT parathyroid hormone-responsive B1 hs
HG-U133_PLUS_2:209958_S_AT parathyroid hormone-responsive B1 hs
HG-U133A_2:209958_S_AT parathyroid hormone-responsive B1 hs
HG-U133A:209958_S_AT parathyroid hormone-responsive B1 hs
HG-U133_PLUS_2:216239_AT parathyroid hormone-responsive B1 hs
HG-U133A_2:216239_AT parathyroid hormone-responsive B1 hs
HG-U133A:216239_AT parathyroid hormone-responsive B1 hs
HU35KSUBB:RC_R43863_AT parathyroid hormone-responsive B1 hs
HUGENEFL:U87408_AT parathyroid hormone-responsive B1 hs
U133_X3P:G4588086_3P_S_AT parathyroid hormone-responsive B1 hs
U133_X3P:HS2.79340.2.S1_3P_AT parathyroid hormone-responsive B1 hs
U133_X3P:4875753C_3P_AT parathyroid hormone-responsive B1 hs
HG-U133_PLUS_2:1555555_AT parathyroid hormone-responsive B1 hs
HG-U133A_2:37547_AT parathyroid hormone-responsive B1 hs
HG-U133_PLUS_2:37547_AT parathyroid hormone-responsive B1 hs
HG-U133A:37547_AT parathyroid hormone-responsive B1 hs
HG-U95AV2:37547_AT parathyroid hormone-responsive B1 hs
HG-U133_PLUS_2:1570448_AT Parathyroid hormone-responsive B1 hs
U133_X3P:HS2.382143.1.S1_3P_AT Parathyroid hormone-responsive B1 hs
HG-U95AV2:31666_F_AT Parathyroid hormone-responsive B1 hs
HU35KSUBC:RC_H38858_AT Parathyroid hormone-responsive B1 hs
MG-U74AV2:102880_AT RIKEN cDNA E130103I17 gene mm
MU11KSUBA:U85993_S_AT RIKEN cDNA E130103I17 gene mm
MG-U74AV2:102881_AT RIKEN cDNA E130103I17 gene mm
MG-U74BV2:105656_AT RIKEN cDNA E130103I17 gene mm
MOE430A:1427341_AT RIKEN cDNA E130103I17 gene mm
MOUSE430A_2:1427341_AT RIKEN cDNA E130103I17 gene mm
MOUSE430_2:1427341_AT RIKEN cDNA E130103I17 gene mm
Protein Similarities
Method ID Description E-Value
blast NP_491973 C48B6.8 [Caenorhabditis elegans] gb|AAK68257.3| Hypothetical protein C48B6.8 [Caenorhabditis elegans] 0.0
blast T28927 hypothetical protein C48B6.8 - Caenorhabditis elegans 0.0
blast CAE67284 Hypothetical protein CBG12732 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:181435_AT
tatgggaaatttgccttctttggatgcactgtttgataaatcatatagagaacttctcga
tgcaatggatagttacaatagtttaactgcaaaaattgaaaatcaaaaggcttcattgaa
ctcattattccaattggcagcagatttgtcaaaactttcaaaagtggatactattttaaa
tggatctttctgggcaaatactcaacagtctctacgagatcgccttcgatgggctgtgaa
aacagatcgtggaaatgaaatgacaatgattgagaaactatgtgaacactcgccaaagga
attaccaaaaattagagaagaagaggaagaggaagagcaacaaatttctatttttatagt
ttttctattaaacatgaattcattttcatgtcgacttcaagctctacatttcgctgcgag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATGGGAAATTTGCCTTCTTTGGAT 401 655 2337 Antisense
GCCTTCTTTGGATGCACTGTTTGAT 28 283 2349 Antisense
GAGAACTTCTCGATGCAATGGATAG 180 393 2384 Antisense
AGGCTTCATTGAACTCATTATTCCA 195 53 2444 Antisense
ATTCCAATTGGCAGCAGATTTGTCA 418 7 2463 Antisense
GGATCTTTCTGGGCAAATACTCAAC 256 511 2518 Antisense
AATACTCAACAGTCTCTACGAGATC 531 171 2533 Antisense
TACGAGATCGCCTTCGATGGGCTGT 247 647 2549 Antisense
GTGAACACTCGCCAAAGGAATTACC 79 481 2618 Antisense
CATTTTCATGTCGACTTCAAGCTCT 547 215 2717 Antisense
TTCAAGCTCTACATTTCGCTGCGAG 169 685 2732 Antisense
Sequence Source Affymetrix Proprietary Database