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[181434_at]

Description R04D3.12 /REP_DB=WormBase Gene ID /WP=CE23891 /TR=Q9U399 /GB=CAB54284.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 26      6grp_cgc > 0      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 25.3
(-0.3)
A 		3.1
(-3)
A 		27
(-0.1)
A 		53
(3)
A 		50
B 17.2
(-3)
A 		39.9
(3)
A 		37.1
(2.3)
A 		23.6
(-1.3)
A 		23
C 16.4
(-2)
A 		67.6
(3)
A 		6.1
(-3)
A 		46.5
(0.9)
A 		62
avr 19.6
(-3) 		36.9
(1.9) 		23.4
(-1.9) 		41
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 45.9
(2.3)
A 		4.7
(-3)
A 		29.7
(0.2)
A 		51.5
(3)
A 		41.7
(1.7)
A 		31.3
(0.4)
A 		47
B 36
(0.4)
A 		31.4
(-0.3)
A 		51.9
(3)
A 		34.4
(0.2)
A 		26.2
(-1.1)
A 		14.6
(-3)
A 		37
C 42.6
(2.7)
A 		44.2
(3)
A 		7.5
(-2.8)
A 		33.7
(1.4)
A 		6
(-3)
A 		28
(0.5)
A 		38
avr 41.5
(3) 		26.8
(-2.2) 		29.7
(-1.2) 		39.9
(2.4) 		24.6
(-3) 		24.6
(-3) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 9.2
(3)
A 		0.7
(-3)
A 		7.1
(1.5)
A 		7.8
(2)
A 		9
B 5.5
(-2.4)
A 		9.8
(3)
A 		8.6
(1.5)
A 		5
(-3)
A 		5
C 5.4
(-1.9)
A 		19.4
(3)
A 		2.1
(-3)
A 		7.8
(-1)
A 		17
avr 6.7
(-1.8) 		10
(3) 		5.9
(-3) 		6.9
(-1.5) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 8.5
(0.6)
A 		1.7
(-3)
A 		6.5
(-0.5)
A 		13
(3)
A 		12.6
(2.8)
A 		7.6
(0.1)
A 		11
B 12.5
(2.9)
A 		10.4
(1.2)
A 		12.6
(3)
A 		9.1
(0.1)
A 		10.6
(1.3)
A 		5.4
(-3)
A 		7
C 15.8
(3)
A 		13.5
(2)
A 		1.9
(-3)
A 		6.8
(-0.9)
A 		1.9
(-3)
A 		9.4
(0.2)
A 		14
avr 12.3
(3) 		8.5
(-1.3) 		7
(-3) 		9.6
(-0.1) 		8.4
(-1.4) 		7.5
(-2.4) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181434_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17409
Sequence Type Exemplar sequence
Representative Public ID R04D3.12 NCBI
Target Description R04D3.12 /REP_DB=WormBase Gene ID /WP=CE23891 /TR=Q9U399 /GB=CAB54284.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077810(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077810 NCBI Caenorhabditis elegans Serpentine Receptor, class D (delta) family member (srd-38) (srd-38) mRNA, complete cds. 11/11 None
R04D3.12 ENSEMBL cdna:known chromosome:CEL140:X:13291726:13292904:1 gene:R04D3.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13291725-13292904(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srd-38
Ensembl R04D3.12
Entrez Gene 187579 Entrez gene
SwissProt Q9U399 EMBL-EBI
WormBase CE23891 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54284 Hypothetical protein R04D3.12 [Caenorhabditis elegans] ref|NP_510211.1| Serpentine Receptor, class D (delta) family member (srd-38) [Caenorhabditis elegans] 0.0
blast CAA94164 Hypothetical protein R04D3.6 [Caenorhabditis elegans] ref|NP_510212.1| Serpentine Receptor, class D (delta) family member (srd-36) [Caenorhabditis elegans] 1.0E-97
blast CAE61417 Hypothetical protein CBG05282 [Caenorhabditis briggsae] 3.0E-93
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510211.1 7 15-34,41-63,96-118,131-153,196-218,239-261,276-298
R04D3.12 7 15-34,41-63,96-118,131-153,196-218,239-261,276-298
Sequence
Target Sequence 
>C. ELEGANS:181434_AT
tatgttgtgttctattttcctctcattttatccacaatatttgtcgtaatcattttcaaa
actcaagtgtggacggtacaagcggaagaagaactccgcgttgtgaacattgatgggaac
aatagtagaatgtatctaatctttgcaatcttgaactactcacactggccaaatacgtca
aatctcgtgatttacggtgcatgcttattggcttctcccgtcatttgctttttctacagg
aagaatactctgaaacatatcaaaaaccaagctggaaatatgtctattgcttgtcaggaa
cagtacagaagcttcatattgggtctcactattcaatgcattcttccttgcgttattttt
attccactagaatttttgtattactactgtatcatcaccaaaaacgagcttttgtttgtg
gagttcttttttccagttatagttgaactaccggccatgattgacccttttatatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATGTTGTGTTCTATTTTCCTCTCA 92 657 415 Antisense
GAAGAACTCCGCGTTGTGAACATTG 144 341 502 Antisense
GCAATCTTGAACTACTCACACTGGC 33 323 559 Antisense
TACTCACACTGGCCAAATACGTCAA 519 643 571 Antisense
TACGGTGCATGCTTATTGGCTTCTC 515 647 607 Antisense
CCCGTCATTTGCTTTTTCTACAGGA 533 259 631 Antisense
GAAGCTTCATATTGGGTCTCACTAT 561 341 722 Antisense
TTCAATGCATTCTTCCTTGCGTTAT 313 685 746 Antisense
CTTGCGTTATTTTTATTCCACTAGA 611 217 761 Antisense
ATAGTTGAACTACCGGCCATGATTG 77 3 853 Antisense
CGGCCATGATTGACCCTTTTATATC 670 241 866 Antisense
Sequence Source Affymetrix Proprietary Database