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[181433_at]

Description F41D3.11 /REP_DB=WormBase Gene ID /WP=CE16030 /TR=O45514 /GB=CAB04382.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 92      4grp_total > 18      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 4.5
(-3)
A 		15.3
(-1.7)
A 		7.7
(-2.6)
A 		55.4
(3)
A 		51
B 3.2
(-3)
A 		6.4
(3)
A 		4.5
(-0.6)
A 		3.4
(-2.6)
A 		3
C 6
(-2.7)
A 		10.4
(-1.7)
A 		4.9
(-3)
A 		29.4
(3)
A 		25
avr 4.6
(-3) 		10.7
(-1.5) 		5.7
(-2.7) 		29.4
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 5.2
(-2.4)
A 		4.8
(-3)
A 		7.4
(1.2)
A 		8.5
(3)
A 		6.3
(-0.6)
A 		4.8
(-3)
A 		4
B 6
(-2)
A 		5.8
(-2.1)
A 		3.8
(-2.6)
A 		5
(-2.3)
A 		23.9
(3)
A 		2.5
(-3)
A 		21
C 3.3
(-3)
A 		5.1
(-0.8)
A 		7
(1.6)
A 		7.1
(1.8)
A 		8.1
(3)
A 		4.1
(-2)
A 		5
avr 4.8
(-2.3) 		5.2
(-2.1) 		6.1
(-1.5) 		6.9
(-0.9) 		12.8
(3) 		3.8
(-3) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 1.6
(-3)
A 		3.3
(-1.4)
A 		2
(-2.6)
A 		8.1
(3)
A 		7
B 1
(-1)
A 		1.6
(3)
A 		1
(-1)
A 		0.7
(-3)
A 		1
C 2
(-2.5)
A 		3
(-0.6)
A 		1.7
(-3)
A 		5
(3)
A 		3
avr 1.5
(-3) 		2.6
(-0.9) 		1.6
(-2.8) 		4.6
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 1
(-3)
A 		1.7
(0.8)
A 		1.6
(0.3)
A 		2.1
(3)
A 		1.9
(1.9)
A 		1.2
(-1.9)
A 		1
B 2.1
(-2.2)
A 		1.9
(-2.3)
A 		0.9
(-3)
A 		1.3
(-2.7)
A 		9.7
(3)
A 		0.9
(-3)
A 		9
C 1.2
(-3)
A 		1.6
(-1.3)
A 		1.8
(-0.4)
A 		1.4
(-2.1)
A 		2.6
(3)
A 		1.4
(-2.1)
A 		1
avr 1.4
(-2.7) 		1.7
(-2.1) 		1.4
(-2.7) 		1.6
(-2.3) 		4.7
(3) 		1.2
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181433_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1048
Sequence Type Exemplar sequence
Representative Public ID F41D3.11 NCBI
Target Description F41D3.11 /REP_DB=WormBase Gene ID /WP=CE16030 /TR=O45514 /GB=CAB04382.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060699(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060699 NCBI Caenorhabditis elegans F41D3.11 (F41D3.11) mRNA, complete cds. 11/11 A 
GENEFINDER00000037786 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12284140:12286897:-1 11/11 None
SNAP00000037777 ENSEMBL cdna:SNAP chromosome:CEL140:I:12285015:12286704:-1 11/11 None
F41D3.11 ENSEMBL cdna:known chromosome:CEL140:I:12285015:12286837:-1 gene:F41D3.11 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12284945-12286768(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F41D3.11
Entrez Gene 185611 Entrez gene
WormBase CE16030 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04382 Hypothetical protein F41D3.11 [Caenorhabditis elegans] ref|NP_493100.1| F41D3.11 [Caenorhabditis elegans] 0.0
blast AAC78192 Hypothetical protein F46F5.14 [Caenorhabditis elegans] ref|NP_493813.2| F46F5.14 [Caenorhabditis elegans] 1.0E-115
blast AAC78192 Hypothetical protein F46F5.14 [Caenorhabditis elegans] ref|NP_493813.2| F46F5.14 [Caenorhabditis elegans] 1.0E-114
blast AAC78192 Hypothetical protein F46F5.14 [Caenorhabditis elegans] ref|NP_493813.2| F46F5.14 [Caenorhabditis elegans] 1.0E-113
blast AAC19260 Hypothetical protein ZK1055.2 [Caenorhabditis elegans] ref|NP_504676.1| ZK1055.2 [Caenorhabditis elegans] 1.0E-112
Protein Domains
Database ID Description E-Value
Pfam IPR004988 EMBL-EBI Protein of unknown function DUF273 1.0E-126
Pfam IPR004988 EMBL-EBI Protein of unknown function DUF273 1.0E-126
Pfam IPR004988 EMBL-EBI Protein of unknown function DUF273 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493100.1 1 13-32
F41D3.11 1 13-32
GENEFINDER00000037786 1 35-52
Sequence
Target Sequence 
>C. ELEGANS:181433_AT
ttcaaactccccgaaggatccatcggaaccgacaacgtcgctctccatctgtttctttcc
gagaagcttttaccaaactcgacgcttgaagtggatctctgcagaaaagtgttcaacgcg
tcccaaaactttgcagaccttttctctttcgaggcgtgcatcaagacttatttcggagtt
gctacccattttggcaaagtaagaattatgaagaagggaaccggctgggctcgagatgga
tggctaacttctatggtgtggcatcctgagctggacttcatgcttcatggatggaagact
aatgagctggtggagacgccgaaggaaattgttggtgcttatcaaatgattcgaaatcaa
tggtacaaccctatgaacggcacaattatcctcgccaaatgcaatcccgagaacacaact
tggaatatggactcaagatttatgggtgaaaaagaggtcattctagccagccttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCAAACTCCCCGAAGGATCCATCG 102 685 643 Antisense
CCATCGGAACCGACAACGTCGCTCT 424 271 662 Antisense
GACGCTTGAAGTGGATCTCTGCAGA 227 381 723 Antisense
ACGCGTCCCAAAACTTTGCAGACCT 91 91 758 Antisense
TTTCTCTTTCGAGGCGTGCATCAAG 687 671 783 Antisense
TTCGGAGTTGCTACCCATTTTGGCA 127 695 814 Antisense
GGATGGCTAACTTCTATGGTGTGGC 202 515 880 Antisense
GCATCCTGAGCTGGACTTCATGCTT 668 309 903 Antisense
GGTACAACCCTATGAACGGCACAAT 443 493 1004 Antisense
TTATCCTCGCCAAATGCAATCCCGA 68 681 1028 Antisense
AAAGAGGTCATTCTAGCCAGCCTTC 73 123 1093 Antisense
Sequence Source Affymetrix Proprietary Database