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[181432_at]

Description F56C3.1 /REP_DB=WormBase Gene ID /WP=CE17892 /TR=O61760 /GB=AAC17004.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 73      4grp_total > 17      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 136
1 2 3 4 range
A 21.9
(-3)
A 		57.1
(-1.4)
A 		39
(-2.2)
A 		153.7
(3)
P 		132
B 22.1
(-2.4)
A 		62.6
(3)
A 		17.8
(-3)
A 		58.5
(2.5)
P 		45
C 58.2
(-2.8)
A 		56.6
(-3)
A 		85.4
(0.1)
A 		112.7
(3)
P 		56
avr 34.1
(-3) 		58.8
(-1) 		47.4
(-1.9) 		108.3
(3) 		74

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 77
1 2 3 4 5 6 range
A 44.4
(0.1)
A 		34.8
(-0.9)
A 		55.7
(1.3)
P 		71.4
(3)
A 		69.9
(2.8)
A 		15.5
(-3)
A 		56
B 32.4
(-1.8)
A 		46.9
(-0.4)
A 		83.3
(3)
P 		74.4
(2.2)
A 		19.6
(-3)
A 		43.2
(-0.8)
A 		64
C 6.7
(-3)
A 		21.7
(-1.4)
A 		16.4
(-2)
A 		63.2
(3)
A 		50.3
(1.6)
A 		59.4
(2.6)
A 		57
avr 27.8
(-3) 		34.5
(-2) 		51.8
(0.4) 		69.7
(3) 		46.6
(-0.3) 		39.4
(-1.3) 		42
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 8
(-3)
A 		12.4
(-1.2)
A 		10.2
(-2.1)
A 		22.5
(3)
P 		15
B 7
(-1.5)
A 		15.5
(3)
A 		4.1
(-3)
A 		12.5
(1.4)
P 		11
C 19.3
(-1.7)
A 		16.3
(-3)
A 		29.8
(3)
A 		19
(-1.8)
P 		14
avr 11.4
(-3) 		14.7
(-0) 		14.7
(-0) 		18
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 8.2
(-1.5)
A 		12.4
(-0)
A 		12.1
(-0.1)
P 		18.1
(2)
A 		21.1
(3)
A 		3.8
(-3)
A 		17
B 11.3
(-1.4)
A 		15.6
(0.7)
A 		20.2
(3)
P 		19.7
(2.8)
A 		8
(-3)
A 		16.1
(1)
A 		12
C 2.5
(-3)
A 		6.6
(-1.6)
A 		4.2
(-2.4)
A 		12.7
(0.5)
A 		16.3
(1.8)
A 		19.9
(3)
A 		17
avr 7.3
(-3) 		11.5
(-0.3) 		12.2
(0.1) 		16.8
(3) 		15.1
(1.9) 		13.3
(0.8) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181432_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18153
Sequence Type Exemplar sequence
Representative Public ID F56C3.1 NCBI
Target Description F56C3.1 /REP_DB=WormBase Gene ID /WP=CE17892 /TR=O61760 /GB=AAC17004.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075856(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075856 NCBI Caenorhabditis elegans F56C3.1 (F56C3.1) mRNA, complete cds. 11/11 None
SNAP00000017309 ENSEMBL cdna:SNAP chromosome:CEL140:X:1387312:1388330:1 10/11 None
GENEFINDER00000017319 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1387312:1388155:1 11/11 None
F56C3.1 ENSEMBL cdna:known chromosome:CEL140:X:1386243:1388155:1 gene:F56C3.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1387293-1388155(+) 88.85 88.85
Public Domain and Genome References
Gene Title
Ensembl F56C3.1
Entrez Gene 186360 Entrez gene
SwissProt O61760 EMBL-EBI
WormBase CE17892 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC17004 Hypothetical protein F56C3.1 [Caenorhabditis elegans] ref|NP_508257.1| F56C3.1 [Caenorhabditis elegans] 1.0E-159
blast AAC17004 Hypothetical protein F56C3.1 [Caenorhabditis elegans] ref|NP_508257.1| F56C3.1 [Caenorhabditis elegans] 1.0E-135
blast AAC17004 Hypothetical protein F56C3.1 [Caenorhabditis elegans] ref|NP_508257.1| F56C3.1 [Caenorhabditis elegans] 1.0E-118
Sequence
Target Sequence 
>C. ELEGANS:181432_AT
gaacttccctcgaactggaacacttaaagtccaagaagatattgttgccagatcccagca
atcttcagctgagacgtcaacatctcagttgccgccgctatccgaagcacagttgaatcg
tccagcatggaggatgttatacgattcaccgttcccttcagtgaaaaaatctgagcaatc
ttcaactggcaccaacaaagtagttttggagaacccggtgactcctgaaaaaactgagaa
aactatggatgatgagctgatgaacaacattggtgagaaaagttatatccaaaatatcat
gtgcgaacaggaggttgctaacgaaaaactaacgccgacatggactggaagttcatcact
cccagcacttgaaaggattatgtcagaaactcaactaccgccacaatccgatgctcagct
tcgtcgtcatataggaagaatgagagacttcccacggttacttccaaaacaagatcagca
atcttcagttggcactagcgaggtgatgagtccaatgcctcctaaaaatacaatggctca
aggccgccgttgggatatgtcata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACTTCCCTCGAACTGGAACACTT 26 351 249 Antisense
GCCAGATCCCAGCAATCTTCAGCTG 379 279 295 Antisense
GAAGCACAGTTGAATCGTCCAGCAT 450 341 352 Antisense
ATGTTATACGATTCACCGTTCCCTT 673 45 382 Antisense
TGAGCAATCTTCAACTGGCACCAAC 114 569 420 Antisense
TATGTCAGAAACTCAACTACCGCCA 468 655 627 Antisense
TGCTCAGCTTCGTCGTCATATAGGA 22 581 660 Antisense
GAATGAGAGACTTCCCACGGTTACT 233 331 686 Antisense
GCAATCTTCAGTTGGCACTAGCGAG 224 323 726 Antisense
AGGTGATGAGTCCAATGCCTCCTAA 282 57 749 Antisense
AAGGCCGCCGTTGGGATATGTCATA 601 161 788 Antisense
Sequence Source Affymetrix Proprietary Database