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[181431_at]

Description B0507.3 /REP_DB=WormBase Gene ID /WP=CE07762 /TR=Q22884 /GB=AAB04820.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 09      4grp_high_8_8 > 09      6grp_total > 92      4grp_total > 22      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 420
1 2 3 4 range
A 528.3
(3)
P 		287.2
(-2.6)
P 		267.7
(-3)
A 		504.4
(2.4)
P 		261
B 627.1
(3)
P 		291.1
(-1.8)
P 		207.2
(-3)
A 		600.8
(2.6)
P 		420
C 475.6
(3)
P 		292.2
(-1.7)
P 		243.9
(-3)
P 		414.5
(1.4)
P 		232
avr 543.7
(3) 		290.2
(-2) 		239.6
(-3) 		506.6
(2.3) 		304

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 226
1 2 3 4 5 6 range
A 251.6
(-2.3)
A 		306
(-0.3)
P 		259.7
(-2)
P 		232.8
(-3)
P 		396.2
(3)
P 		238.4
(-2.8)
P 		163
B 359.6
(3)
P 		304.2
(1.2)
P 		210.2
(-1.7)
A 		337.5
(2.3)
P 		337.1
(2.3)
P 		170.1
(-3)
P 		190
C 228
(-0.8)
P 		286.2
(1.9)
A 		284.1
(1.8)
P 		181.3
(-3)
P 		309.8
(3)
P 		267.7
(1)
P 		129
avr 279.7
(-0.3) 		298.8
(0.6) 		251.3
(-1.7) 		250.5
(-1.8) 		347.7
(3) 		225.4
(-3) 		122
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 152
1 2 3 4 range
A 192.3
(3)
P 		62.3
(-3)
P 		70
(-2.6)
A 		73.8
(-2.5)
P 		130
B 200
(3)
P 		71.9
(-2.1)
P 		48
(-3)
A 		128
(0.2)
P 		152
C 157.4
(3)
P 		84
(-2)
P 		85
(-2)
P 		69.9
(-3)
P 		88
avr 183.2
(3) 		72.7
(-2.7) 		67.7
(-3) 		90.6
(-1.8) 		116

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 101
1 2 3 4 5 6 range
A 46.4
(-3)
A 		108.8
(2.1)
P 		56.6
(-2.2)
P 		59
(-2)
P 		119.5
(3)
P 		58
(-2)
P 		73
B 125.1
(2.2)
P 		101.3
(0.5)
P 		51
(-3)
A 		89.4
(-0.3)
P 		136.9
(3)
P 		63.4
(-2.1)
P 		86
C 84.5
(1.5)
P 		87.3
(1.8)
A 		72.3
(0.4)
P 		36.4
(-3)
P 		100.2
(3)
P 		89.6
(2)
P 		64
avr 85.3
(-0.4) 		99.1
(1) 		60
(-3) 		61.6
(-2.8) 		118.9
(3) 		70.3
(-2) 		59
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181431_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11965
Sequence Type Exemplar sequence
Representative Public ID B0507.3 NCBI
Target Description B0507.3 /REP_DB=WormBase Gene ID /WP=CE07762 /TR=Q22884 /GB=AAB04820.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072859(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072859 NCBI Caenorhabditis elegans B0507.3 (B0507.3) mRNA, complete cds. 11/11 None
SNAP00000006057 ENSEMBL cdna:SNAP chromosome:CEL140:V:8771506:8773329:1 11/11 None
GENEFINDER00000006070 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8771506:8776368:1 11/11 None
B0507.3 ENSEMBL cdna:known chromosome:CEL140:V:8771496:8773463:1 gene:B0507.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8771506-8773330(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0507.3
Entrez Gene 179254 Entrez gene
SwissProt Q22884 EMBL-EBI
WormBase CE07762 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB04820 Hypothetical protein B0507.3 [Caenorhabditis elegans] ref|NP_505260.1| B0507.3 [Caenorhabditis elegans] 0.0
blast AAS47683 Serpentine receptor, class x protein 115 [Caenorhabditis elegans] ref|NP_001021353.1| Serpentine Receptor, class X family member (srx-115) [Caenorhabditis elegans] 1.0E-147
blast CAE66797 Hypothetical protein CBG12158 [Caenorhabditis briggsae] 1.0E-105
blast CAE71582 Hypothetical protein CBG18537 [Caenorhabditis briggsae] 6.0E-73
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000006070 4 556-578,591-613,640-662,711-733
Sequence
Target Sequence 
>C. ELEGANS:181431_AT
gaaacttctttcctacatatcatccgctcacaacggaagtgtcactgatgaagtacttca
tgattacttacgtcatccatttgtcttattgaaggagaaaggtgttatccgccaacaacc
taatccatttttccatctgatgagtactccacaagtactagcaggtactccatcagtcat
ccctacaccagcaatgatgtcaccaaatcctgcaatggttcaaaaatcatcgaagccatc
tactccgattccagccccaccagtgctcgtaccacaagtggagctccctgccaaaacaag
ttctgtctcacagaaaacaacggtatccccacccgtggagaaagttacaccgcctcctca
gcatcctccccaactctcacttcaagttccactcaatggacctcaaatggatcctaccaa
acaatttctagttccaatgactcgtgcttgcaatcaatggtccgtagtttcaatggcttt
acccctgagacttgtatgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAACTTCTTTCCTACATATCATCC 409 357 780 Antisense
TTACTTACGTCATCCATTTGTCTTA 378 681 843 Antisense
ACAACCTAATCCATTTTTCCATCTG 85 113 894 Antisense
ATCCCTACACCAGCAATGATGTCAC 213 39 958 Antisense
ACCAGTGCTCGTACCACAAGTGGAG 258 87 1038 Antisense
GCTCCCTGCCAAAACAAGTTCTGTC 368 299 1062 Antisense
GTGGAGAAAGTTACACCGCCTCCTC 193 491 1114 Antisense
TCTCACTTCAAGTTCCACTCAATGG 446 613 1154 Antisense
GTTCCAATGACTCGTGCTTGCAATC 208 441 1210 Antisense
AATGGTCCGTAGTTTCAATGGCTTT 417 163 1235 Antisense
GCTTTACCCCTGAGACTTGTATGTC 602 301 1255 Antisense
Sequence Source Affymetrix Proprietary Database