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[181430_at]

Description F20E11.5 /REP_DB=WormBase Gene ID /WP=CE18614 /TR=Q9XV81 /GB=CAB04144.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 05      4grp_total > 0      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 41.1
(1.6)
A 		6.7
(-3)
A 		33.2
(0.5)
A 		51.9
(3)
A 		45
B 5.2
(-3)
A 		30.7
(3)
A 		17.7
(-0.1)
A 		15.9
(-0.5)
A 		26
C 21.1
(1.2)
A 		25.4
(3)
A 		24.1
(2.5)
A 		10.9
(-3)
A 		15
avr 22.5
(-1.2) 		20.9
(-3) 		25
(1.6) 		26.2
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 37.2
(3)
A 		29.9
(1.8)
A 		12.4
(-1.2)
A 		1.9
(-3)
A 		6.1
(-2.3)
A 		4.1
(-2.6)
A 		35
B 27.6
(1.2)
A 		20.2
(-0.1)
A 		3.6
(-3)
A 		14.4
(-1.1)
A 		37.6
(3)
A 		26.1
(1)
M 		34
C 13.1
(-1.7)
A 		18.4
(-0.9)
A 		43.7
(3)
A 		4.8
(-3)
A 		12.6
(-1.8)
A 		7.2
(-2.6)
A 		39
avr 26
(3) 		22.8
(2) 		19.9
(1.1) 		7
(-3) 		18.8
(0.7) 		12.5
(-1.3) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 15
(3)
A 		1.5
(-3)
A 		8.7
(0.2)
A 		7.6
(-0.3)
A 		14
B 1.7
(-3)
A 		7.6
(3)
A 		4.1
(-0.6)
A 		3.4
(-1.3)
A 		6
C 7
(1.7)
A 		7.3
(2)
A 		8.4
(3)
A 		1.8
(-3)
A 		7
avr 7.9
(3) 		5.5
(-1) 		7.1
(1.7) 		4.3
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 6.9
(0.8)
A 		10.6
(3)
A 		2.7
(-1.7)
A 		0.5
(-3)
A 		1.8
(-2.2)
A 		1
(-2.7)
A 		10
B 9.6
(0.6)
A 		6.7
(-0.6)
A 		0.9
(-3)
A 		3.8
(-1.8)
A 		15.3
(3)
A 		9.7
(0.7)
M 		14
C 4.9
(-0.7)
A 		5.6
(-0.3)
A 		11.1
(3)
A 		1
(-3)
A 		4.1
(-1.2)
A 		2.4
(-2.2)
A 		10
avr 7.1
(2.5) 		7.6
(3) 		4.9
(0.2) 		1.8
(-3) 		7.1
(2.5) 		4.4
(-0.3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181430_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13956
Sequence Type Exemplar sequence
Representative Public ID F20E11.5 NCBI
Target Description F20E11.5 /REP_DB=WormBase Gene ID /WP=CE18614 /TR=Q9XV81 /GB=CAB04144.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075019(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075019 NCBI Caenorhabditis elegans F20E11.5 (F20E11.5) mRNA, complete cds. 11/11 None
SNAP00000027630 ENSEMBL cdna:SNAP chromosome:CEL140:V:17463390:17465009:-1 11/11 None
GENEFINDER00000027635 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17463390:17465009:-1 11/11 None
F20E11.5 ENSEMBL cdna:known chromosome:CEL140:V:17463390:17465009:-1 gene:F20E11.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17463389-17465009(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F20E11.5
Entrez Gene 184733 Entrez gene
SwissProt Q9XV81 EMBL-EBI
WormBase CE18614 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04144 Hypothetical protein F20E11.5 [Caenorhabditis elegans] ref|NP_507420.1| F20E11.5 [Caenorhabditis elegans] 1.0E-172
blast CAA16424 Hypothetical protein Y68A4A.10a [Caenorhabditis elegans] ref|NP_001024276.1| Y68A4A.10a [Caenorhabditis elegans] 1.0E-119
blast CAB04138 Hypothetical protein F20E11.7 [Caenorhabditis elegans] ref|NP_507421.1| F20E11.7 [Caenorhabditis elegans] 5.0E-96
Protein Domains
Database ID Description E-Value
Pfam IPR005098 EMBL-EBI Protein of unknown function DUF281 1.5E-41
Pfam IPR005098 EMBL-EBI Protein of unknown function DUF281 2.3E-55
Pfam IPR005098 EMBL-EBI Protein of unknown function DUF281 9.5E-42
Sequence
Target Sequence 
>C. ELEGANS:181430_AT
cggatcctatgagtgctcaggtctcatgcatcgccacccctggcacaaatagcgacggat
gctccacacttgcagtcaaatgcacgataaaccctggattcgaatgtgatgtagctaaat
gcatggcggaccctgcatacaaatgttatgacgctgtacttattcttgaaacccccaacg
atttatttacttctggcacagggcctgggtcaatcgcagagacttctatcacttgtggag
acgatgtagtttggcaagattcgaatggaattcgaggagacatgttgactgcgagcattt
cccctcagacttgtcttccatgccagacgtgcaccgcatttgaggatccaatggtccccg
aagccacttgcaccgccaccgttggtatgactagcactggttgcgccacccttgcagtca
aatgtatgataaacgctggattcgaatgtaacgatgttgtacttattcttgaaaccaccg
gaggcgcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGGATCCTATGAGTGCTCAGGTCTC 410 243 254 Antisense
TGAGTGCTCAGGTCTCATGCATCGC 524 567 263 Antisense
CAAATAGCGACGGATGCTCCACACT 679 193 299 Antisense
ATGTTATGACGCTGTACTTATTCTT 59 47 396 Antisense
GCTGTACTTATTCTTGAAACCCCCA 537 293 406 Antisense
GAGACGATGTAGTTTGGCAAGATTC 659 393 491 Antisense
ACATGTTGACTGCGAGCATTTCCCC 209 107 533 Antisense
TTTGAGGATCCAATGGTCCCCGAAG 680 561 592 Antisense
GTATGACTAGCACTGGTTGCGCCAC 461 455 638 Antisense
AACGATGTTGTACTTATTCTTGAAA 114 145 703 Antisense
ATTCTTGAAACCACCGGAGGCGCAT 486 11 718 Antisense
Sequence Source Affymetrix Proprietary Database