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[181429_at]

Description C37H5.5 /REP_DB=WormBase Gene ID /WP=CE27836 /TR=P91136 /GB=AAB42369.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 76      6grp_high1_10_10 > 76      4grp_highest_8_8 > 23      4grp_high_8_8 > 05      6grp_highest_nonorm > 95      6grp_total > 67      4grp_total > 03      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 902
1 2 3 4 range
A 882.6
(-2.3)
P 		863.4
(-2.5)
P 		808.4
(-3)
P 		1453.3
(3)
P 		645
B 810.8
(-2.1)
P 		717.4
(-2.7)
P 		673.3
(-3)
P 		1575.6
(3)
P 		902
C 857.8
(-1.9)
P 		732.8
(-3)
P 		764.1
(-2.7)
P 		1428.8
(3)
P 		696
avr 850.4
(-2.2) 		771.2
(-2.8) 		748.6
(-3) 		1485.9
(3) 		737

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 516
1 2 3 4 5 6 range
A 564.8
(-2.5)
P 		656.2
(-1.3)
P 		526.1
(-3)
P 		609.2
(-1.9)
P 		620.6
(-1.7)
P 		975.5
(3)
P 		449
B 608.5
(-2)
P 		628.8
(-1.8)
P 		523
(-3)
P 		678.2
(-1.2)
P 		639.3
(-1.6)
P 		1038.8
(3)
P 		516
C 596.3
(-2.7)
P 		627.3
(-2.1)
P 		680.7
(-1.2)
P 		658
(-1.6)
P 		576.8
(-3)
P 		923.5
(3)
P 		347
avr 589.9
(-2.8) 		637.4
(-2.1) 		576.6
(-3) 		648.5
(-1.9) 		612.2
(-2.5) 		979.3
(3) 		403
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 180
1 2 3 4 range
A 321.4
(3)
P 		187.4
(-3)
P 		211.3
(-1.9)
P 		212.7
(-1.9)
P 		134
B 258.5
(0.4)
P 		177.2
(-2.3)
P 		156
(-3)
P 		335.8
(3)
P 		180
C 284
(3)
P 		210.7
(-3)
P 		266.3
(1.6)
P 		240.9
(-0.5)
P 		73
avr 288
(3) 		191.8
(-3) 		211.2
(-1.8) 		263.1
(1.4) 		96

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 283
1 2 3 4 5 6 range
A 104.1
(-3)
P 		233.4
(2.8)
P 		114.6
(-2.5)
P 		154.5
(-0.7)
P 		187.3
(0.7)
P 		237.5
(3)
P 		133
B 211.7
(-1)
P 		209.3
(-1.1)
P 		127
(-3)
P 		179.6
(-1.8)
P 		259.7
(0.1)
P 		387.4
(3)
P 		260
C 221
(0)
P 		191.4
(-1)
P 		173.3
(-1.6)
P 		132.3
(-3)
P 		186.6
(-1.2)
P 		309.1
(3)
P 		177
avr 178.9
(-1.6) 		211.4
(-0.5) 		138.3
(-3) 		155.5
(-2.4) 		211.2
(-0.5) 		311.3
(3) 		173
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181429_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14905
Sequence Type Exemplar sequence
Representative Public ID C37H5.5 NCBI
Target Description C37H5.5 /REP_DB=WormBase Gene ID /WP=CE27836 /TR=P91136 /GB=AAB42369.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071891(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071891 NCBI Caenorhabditis elegans C37H5.5 (C37H5.5) mRNA, complete cds. 10/11 None
SNAP00000016583 ENSEMBL cdna:SNAP chromosome:CEL140:V:4827179:4834146:1 10/11 None
GENEFINDER00000016592 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4829237:4831830:1 10/11 None
C37H5.5.2 ENSEMBL cdna:known chromosome:CEL140:V:4827167:4835834:1 gene:C37H5.5 10/11 None
C37H5.5.1 ENSEMBL cdna:known chromosome:CEL140:V:4827174:4835834:1 gene:C37H5.5 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4827076-4835748(+) 95.5 100.0
Public Domain and Genome References
Gene Title
Ensembl C37H5.5
Entrez Gene 178874 Entrez gene
SwissProt P91136 EMBL-EBI
WormBase CE29708 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:264131_AT expressed protein at
CANINE:1605325_AT similar to CG1234-PA cfa
CANINE:1601454_AT similar to CG1234-PA cfa
CANINE:1597858_S_AT similar to CG1234-PA cfa
CANINE_2:CFA.12506.1.A1_AT similar to CG1234-PA cfa
CANINE_2:CFA.12506.1.A1_S_AT similar to CG1234-PA cfa
CANINE_2:CFA.12506.2.A1_AT similar to CG1234-PA cfa
DROSOPHILA_2:1639632_AT dm
DROSGENOME1:154719_AT dm
CHICKEN:GGAAFFX.21964.1.S1_AT nucleolar complex associated 3 homolog (S. cerevisiae) gga
CHICKEN:GGAAFFX.4072.1.S1_AT nucleolar complex associated 3 homolog (S. cerevisiae) gga
HG-U133_PLUS_2:218889_AT nucleolar complex associated 3 homolog (S. cerevisiae) hs
HG-U133A:218889_AT nucleolar complex associated 3 homolog (S. cerevisiae) hs
HG-U133A_2:218889_AT nucleolar complex associated 3 homolog (S. cerevisiae) hs
HU35KSUBB:RC_AA213857_I_AT nucleolar complex associated 3 homolog (S. cerevisiae) hs
U133_X3P:G11967984_3P_AT nucleolar complex associated 3 homolog (S. cerevisiae) hs
HG-U95C:62557_AT nucleolar complex associated 3 homolog (S. cerevisiae) hs
HG-U95C:64808_AT nucleolar complex associated 3 homolog (S. cerevisiae) hs
HG-U95E:87850_AT nucleolar complex associated 3 homolog (S. cerevisiae) hs
HU35KSUBC:RC_W72020_AT Nucleolar complex associated 3 homolog (S. cerevisiae) hs
U133_X3P:HS2.58175.1.S1_3P_AT Nucleolar complex associated 3 homolog (S. cerevisiae) hs
HG-U133_PLUS_2:1561012_AT Nucleolar complex associated 3 homolog (S. cerevisiae) hs
HU35KSUBC:RC_D20313_AT Nucleolar complex associated 3 homolog (S. cerevisiae) hs
MG-U74CV2:134066_F_AT nucleolar complex associated 3 homolog (S. cerevisiae) mm
MOE430A:1426286_AT nucleolar complex associated 3 homolog (S. cerevisiae) mm
MOUSE430A_2:1426286_AT nucleolar complex associated 3 homolog (S. cerevisiae) mm
MOUSE430_2:1426286_AT nucleolar complex associated 3 homolog (S. cerevisiae) mm
MG-U74CV2:134045_AT Nucleolar complex associated 3 homolog (S. cerevisiae) (Noc3l), mRNA mm
MOUSE430_2:1437500_AT Nucleolar complex associated 3 homolog (S. cerevisiae) (Noc3l), mRNA mm
MOE430B:1437500_AT Nucleolar complex associated 3 homolog (S. cerevisiae) (Noc3l), mRNA mm
RG-U34B:RC_AI044551_AT similar to AD24 rn
RAE230B:1385218_AT similar to AD24 rn
RAT230_2:1385218_AT similar to AD24 rn
YEAST_2:1774035_AT Protein that forms a nuclear complex with Noc2p that binds to 66S ribosomal precursors to mediate their intranuclear transport; also binds to chromatin to promote the association of DNA replication factors and replication initiation Sc
Protein Similarities
Method ID Description E-Value
blast AAB42369 Hypothetical protein C37H5.5 [Caenorhabditis elegans] ref|NP_504292.2| C37H5.5 [Caenorhabditis elegans] sp|P91136|NOC3L_CAEEL Nucleolar complex protein 3 homolog (NOC3 protein homolog) (NOC3-like protein) (Nucleolar complex-associated protein 3-like protein) 0.0
blast Q61LN7 Nucleolar complex protein 3 homolog (NOC3 protein homolog) (NOC3-like protein) (Nucleolar complex-associated protein 3-like protein) emb|CAE64197.1| Hypothetical protein CBG08826 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
scop a.2.7.Seryl-tRNA synthetase (SerRS) All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Seryl-tRNA synthetase (SerRS) 5.5
scop a.2.7.Seryl-tRNA synthetase (SerRS) All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Seryl-tRNA synthetase (SerRS) 5.59999990463257
scop a.2.7.Seryl-tRNA synthetase (SerRS) All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Seryl-tRNA synthetase (SerRS) 2.90000009536743
Sequence
Target Sequence 
>C. ELEGANS:181429_AT
tctggcctatcgagttctcaaccatttgccatttgaaaaacgtccggaacaacgaaaaaa
tcagattataatggcggcgaagacgctggaaacgatgcttgtgatccgaagaaaagctgt
tccgttgtccagagttgctgcttttgtcaagcggcttctgtctattgcgactgttcttga
cgattttccagcactatgcattgtgtcgcttgcccaccccaagctctcctcaatgatcga
agacgaagaaggtggtgctccaggaatctaccggccggatatcgatgatccagacgtcgc
aaacgccttggcttctgatgttcgtgatgagctctcgatgctggctcgtcgaagaaacac
tgaactttctcgatttgccaacaatattctctacggagtaccttcgacagga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTGGCCTATCGAGTTCTCAACCAT 657 605 1818 Antisense
AAAGCTGTTCCGTTGTCCAGAGTTG 93 125 1930 Antisense
GTTGCTGCTTTTGTCAAGCGGCTTC 71 441 1951 Antisense
GCTTCTGTCTATTGCGACTGTTCTT 672 305 1971 Antisense
TGTTCTTGACGATTTTCCAGCACTA 685 561 1989 Antisense
AGCACTATGCATTGTGTCGCTTGCC 221 77 2007 Antisense
AAGGTGGTGCTCCAGGAATCTACCG 136 157 2066 Antisense
TCGCAAACGCCTTGGCTTCTGATGT 237 599 2114 Antisense
TGATGAGCTCTCGATGCTGGCTCGT 156 567 2142 Antisense
CACTGAACTTTCTCGATTTGCCAAC 152 197 2175 Antisense
TCTCTACGGAGTACCTTCGACAGGA 123 583 2205 Antisense
Sequence Source Affymetrix Proprietary Database