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[181427_at] 7TM chemoreceptor, srx family

Description F31F4.3 /REP_DB=WormBase Gene ID /WP=CE09823 /TR=O17137 /GB=AAG24087.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 60      4grp_total > 19      6grp_cgc > 94      6grp_cgc_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 25.2
(-0.4)
A 		40.5
(3)
A 		13.7
(-3)
A 		36.1
(2)
A 		27
B 18
(3)
A 		8.5
(-1.4)
A 		5.1
(-3)
A 		6.6
(-2.3)
A 		13
C 2.7
(-3)
A 		5.9
(-2.6)
A 		6.7
(-2.5)
A 		54.5
(3)
A 		52
avr 15.3
(-1.3) 		18.3
(-0.5) 		8.5
(-3) 		32.4
(3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 33.6
(1.3)
A 		13.4
(-1.9)
A 		44.2
(3)
A 		6.4
(-3)
A 		13.1
(-1.9)
A 		22
(-0.5)
A 		38
B 5.5
(-2.6)
A 		21.9
(0.2)
A 		23.6
(0.5)
A 		38.6
(3)
A 		2.9
(-3)
A 		13.4
(-1.2)
A 		36
C 17
(-2)
A 		30.8
(-0.3)
A 		8.9
(-3)
A 		57.3
(3)
A 		23
(-1.3)
A 		13.7
(-2.4)
A 		48
avr 18.7
(-1.4) 		22
(-0.4) 		25.6
(0.6) 		34.1
(3) 		13
(-3) 		16.4
(-2) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 9.2
(3)
A 		8.8
(2.6)
A 		3.6
(-3)
A 		5.3
(-1.2)
A 		6
B 5.7
(3)
A 		2.1
(-1.8)
A 		1.2
(-3)
A 		1.4
(-2.7)
A 		5
C 0.9
(-3)
A 		1.7
(-2.4)
A 		2.3
(-2)
A 		9.2
(3)
A 		8
avr 5.3
(3) 		4.2
(0.7) 		2.4
(-3) 		5.3
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 6.2
(0.5)
A 		4.8
(-0.6)
A 		9.6
(3)
A 		1.6
(-3)
A 		3.9
(-1.3)
A 		5.4
(-0.2)
A 		8
B 1.9
(-2.5)
A 		7.3
(1.1)
A 		5.7
(0)
A 		10.2
(3)
A 		1.2
(-3)
A 		5
(-0.5)
A 		9
C 6.3
(-0.4)
A 		9.4
(1.6)
A 		2.3
(-3)
A 		11.5
(3)
A 		7.5
(0.4)
A 		4.6
(-1.5)
A 		9
avr 4.8
(-2) 		7.2
(2) 		5.9
(-0.2) 		7.8
(3) 		4.2
(-3) 		5
(-1.7) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181427_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15870
Sequence Type Exemplar sequence
Representative Public ID F31F4.3 NCBI
Target Description F31F4.3 /REP_DB=WormBase Gene ID /WP=CE09823 /TR=O17137 /GB=AAG24087.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070891(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070891 NCBI Caenorhabditis elegans Serpentine Receptor, class X family member (srx-22) (srx-22) mRNA, complete cds. 11/11 None
SNAP00000012370 ENSEMBL cdna:SNAP chromosome:CEL140:V:679606:681538:1 11/11 None
F31F4.3 ENSEMBL cdna:known chromosome:CEL140:V:679793:681239:1 gene:F31F4.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:679605-681295(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srx family
Gene Symbol srx-22
Ensembl F31F4.3
Entrez Gene 185165 Entrez gene
SwissProt O17137 EMBL-EBI
WormBase CE36540 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503292 Serpentine Receptor, class X family member (srx-22) [Caenorhabditis elegans] gb|AAG24087.2| Serpentine receptor, class x protein 22 [Caenorhabditis elegans] 1.0E-153
blast NP_503292 Serpentine Receptor, class X family member (srx-22) [Caenorhabditis elegans] gb|AAG24087.2| Serpentine receptor, class x protein 22 [Caenorhabditis elegans] 1.0E-142
blast CAE62226 Hypothetical protein CBG06278 [Caenorhabditis briggsae] 2.0E-97
blast CAE62226 Hypothetical protein CBG06278 [Caenorhabditis briggsae] 5.0E-94
blast NP_503291 Serpentine Receptor, class X family member (srx-21) [Caenorhabditis elegans] gb|AAG24088.2| Serpentine receptor, class x protein 21 [Caenorhabditis elegans] 7.0E-90
blast NP_503291 Serpentine Receptor, class X family member (srx-21) [Caenorhabditis elegans] gb|AAG24088.2| Serpentine receptor, class x protein 21 [Caenorhabditis elegans] 3.0E-84
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503292.2 7 5-27,48-67,82-104,125-147,167-189,223-245,249-271
F31F4.3 7 5-27,48-67,82-104,125-147,167-189,223-245,249-271
SNAP00000012370 5 29-46,67-86,101-123,144-166,186-208
Sequence
Target Sequence 
>C. ELEGANS:181427_AT
ctccacctaatcattgccttgaaccgattatttgcagtgttttggacttttcattacgat
cagattttcacaaaattcaatacaaatttgatgaagaatattgcttgttttattggattt
tcgatttgcttcttattttacgacgttcttggctgctacttttactatgacacaaggacc
tttaccttcacatttttggattcaccaaagtgtgacgacattacctggtattccgacttt
attttcaacatatctctagttgcacttacccttattatcaacttgctcaccgcctacagg
gccgggaaggctagcagaagcctgctcgacgcagctggagcacaaatgtccaaggagcag
aggcatcgcgagaggagctttataaagcagtcgtttttgcaagggatgacaatattttcg
gggcaggtgacctatcacgtcacagctccgttggtcactaattcggttctactgtttttg
gatgcaagtctatgggctttcatgcatgcttttgagggattacttatacttctttcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCCACCTAATCATTGCCTTGAACC 211 235 313 Antisense
TTTGCTTCTTATTTTACGACGTTCT 543 665 437 Antisense
ACGTTCTTGGCTGCTACTTTTACTA 642 75 455 Antisense
GACCTTTACCTTCACATTTTTGGAT 29 369 489 Antisense
GTGTGACGACATTACCTGGTATTCC 109 489 522 Antisense
GGTATTCCGACTTTATTTTCAACAT 442 505 539 Antisense
ACATATCTCTAGTTGCACTTACCCT 68 105 560 Antisense
ACTTACCCTTATTATCAACTTGCTC 300 103 576 Antisense
GGGGCAGGTGACCTATCACGTCACA 11 499 732 Antisense
GTTGGTCACTAATTCGGTTCTACTG 104 437 762 Antisense
GAGGGATTACTTATACTTCTTTCAA 253 357 826 Antisense
Sequence Source Affymetrix Proprietary Database