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[181426_at]

Description F41E6.1 /REP_DB=WormBase Gene ID /WP=CE10244 /TR=O16464 /GB=AAB65963.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 81      6grp_high1_10_10 > 19      6grp_highest_nonorm > 70      6grp_total > 29      4grp_total > 38      6grp_highest_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 251
1 2 3 4 range
A 448.7
(3)
P 		340.1
(-0.4)
A 		258.6
(-3)
A 		277.7
(-2.4)
P 		190
B 446.2
(3)
P 		297.8
(-1.6)
A 		253.1
(-3)
P 		398.7
(1.5)
P 		193
C 449.2
(3)
P 		279.4
(-1.1)
A 		198.3
(-3)
M 		340.8
(0.4)
P 		251
avr 448
(3) 		305.8
(-1) 		236.7
(-3) 		339.1
(-0.1) 		211

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 285
1 2 3 4 5 6 range
A 500.4
(3)
P 		271.2
(-1.8)
P 		215.1
(-3)
P 		222.5
(-2.8)
P 		340.3
(-0.4)
P 		248.5
(-2.3)
P 		285
B 351
(3)
P 		320.8
(1.6)
P 		235.9
(-2.4)
P 		222.4
(-3)
P 		318.5
(1.5)
P 		270.9
(-0.7)
P 		129
C 405
(3)
P 		338.6
(0.8)
P 		270.9
(-1.4)
P 		224
(-3)
P 		320.2
(0.2)
P 		232.1
(-2.7)
P 		181
avr 418.8
(3) 		310.2
(-0.3) 		240.6
(-2.5) 		223
(-3) 		326.3
(0.2) 		250.5
(-2.2) 		196
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 123
1 2 3 4 range
A 163.4
(3)
P 		73.8
(-1.4)
A 		67.6
(-1.7)
A 		40.7
(-3)
P 		123
B 142.3
(3)
P 		73.6
(-1.9)
A 		58.6
(-3)
P 		85
(-1.1)
P 		84
C 148.7
(3)
P 		80.3
(-1.5)
A 		69.1
(-2.2)
M 		57.5
(-3)
P 		91
avr 151.5
(3) 		75.9
(-2) 		65.1
(-2.7) 		61.1
(-3) 		90

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 105
1 2 3 4 5 6 range
A 92.2
(1.9)
P 		96.4
(2.3)
P 		46.8
(-3)
P 		56.4
(-2)
P 		102.7
(3)
P 		60.5
(-1.5)
P 		56
B 122.1
(2.4)
P 		106.8
(1.1)
P 		57.3
(-3)
P 		58.9
(-2.9)
P 		129.4
(3)
P 		101
(0.6)
P 		72
C 150.1
(3)
P 		103.3
(0.3)
P 		68.9
(-1.6)
P 		45
(-3)
P 		103.6
(0.3)
P 		77.7
(-1.1)
P 		105
avr 121.5
(3) 		102.2
(1.3) 		57.7
(-2.6) 		53.4
(-3) 		111.9
(2.2) 		79.7
(-0.7) 		68
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181426_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12143
Sequence Type Exemplar sequence
Representative Public ID F41E6.1 NCBI
Target Description F41E6.1 /REP_DB=WormBase Gene ID /WP=CE10244 /TR=O16464 /GB=AAB65963.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072824(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072824 NCBI Caenorhabditis elegans F41E6.1 (F41E6.1) mRNA, complete cds. 11/11 None
F41E6.1 ENSEMBL cdna:known chromosome:CEL140:V:8624995:8629418:1 gene:F41E6.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000009430 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8624995-8629419(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F41E6.1
Entrez Gene 185617 Entrez gene
SwissProt O16464 EMBL-EBI
WormBase CE10244 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB65963 Hypothetical protein F41E6.1 [Caenorhabditis elegans] ref|NP_505225.1| F41E6.1 [Caenorhabditis elegans] 1.0E-140
blast CAE58350 Hypothetical protein CBG01471 [Caenorhabditis briggsae] 1.0E-72
Sequence
Target Sequence 
>C. ELEGANS:181426_AT
atgaagcccaatgctacagctgctcgtcgcctcaattgcacctcaaatggccaaaagatg
agaacaccaatcgtttactctacttacaagaattcccatggtttgcaaatgagagttgtg
agacggtacgtgatctgatgcctgttgtagattgtgaagacagtgtttgcatcaaggctg
ttattaaacaaccacctgccgaaagatcaatttgtgagacgggcggtgcaattgtgcgag
actgctggagtcgtgtcttctccaacgccgtcaagaatccacgagctcgtcgtgacgtcg
ttcgacttgcccagacatctgacagtgaggagacaatcggaatcatttacacctgcgaag
ggtttttgtgtaattcatctgcagtctcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGAAGCCCAATGCTACAGCTGCTC 610 43 296 Antisense
GCCTCAATTGCACCTCAAATGGCCA 517 281 324 Antisense
ACACCAATCGTTTACTCTACTTACA 118 109 359 Antisense
GACGGTACGTGATCTGATGCCTGTT 677 375 417 Antisense
TAAACAACCACCTGCCGAAAGATCA 209 639 480 Antisense
GTGAGACGGGCGGTGCAATTGTGCG 608 481 509 Antisense
AGACTGCTGGAGTCGTGTCTTCTCC 187 71 534 Antisense
CTCCAACGCCGTCAAGAATCCACGA 124 237 555 Antisense
GAATCCACGAGCTCGTCGTGACGTC 51 331 570 Antisense
TCGACTTGCCCAGACATCTGACAGT 325 601 597 Antisense
TTTGTGTAATTCATCTGCAGTCTCC 406 667 660 Antisense
Sequence Source Affymetrix Proprietary Database