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[181425_at]

Description ZC196.2 /REP_DB=WormBase Gene ID /WP=CE15068 /TR=O01630 /GB=AAB52293.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 73      4grp_total > 10      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 137
1 2 3 4 range
A 22.9
(-2.2)
A 		34.6
(-1.7)
A 		5.3
(-3)
A 		142.4
(3)
P 		137
B 31.3
(-1.5)
A 		26.3
(-2.2)
A 		20.9
(-3)
A 		62.4
(3)
P 		42
C 13.8
(-3)
A 		17.3
(-2.8)
A 		21.7
(-2.6)
A 		128.5
(3)
P 		115
avr 22.7
(-2.6) 		26.1
(-2.4) 		16
(-3) 		111.1
(3) 		95

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 78
1 2 3 4 5 6 range
A 53.4
(-2.3)
A 		43.9
(-3)
A 		121.9
(3)
P 		101.5
(1.4)
P 		118.7
(2.8)
P 		54.5
(-2.2)
P 		78
B 60.4
(-3)
A 		79.6
(-0.8)
P 		104.3
(2)
P 		100.1
(1.5)
P 		112
(2.9)
P 		113.1
(3)
P 		53
C 51.8
(-3)
A 		79.6
(-0.1)
A 		109.5
(3)
M 		100.4
(2.1)
P 		79.1
(-0.2)
P 		75.1
(-0.6)
P 		58
avr 55.2
(-3) 		67.7
(-1.7) 		111.9
(3) 		100.7
(1.8) 		103.3
(2.1) 		80.9
(-0.3) 		57
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 8.4
(-0.8)
A 		7.5
(-1.1)
A 		1.4
(-3)
A 		20.8
(3)
P 		19
B 10
(0.7)
A 		6.5
(-1.8)
A 		4.8
(-3)
A 		13.3
(3)
P 		9
C 4.6
(-3)
A 		5
(-2.9)
A 		7.6
(-1.9)
A 		21.7
(3)
P 		17
avr 7.7
(-1.7) 		6.3
(-2.3) 		4.6
(-3) 		18.6
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 9.8
(-3)
A 		15.6
(-1.7)
A 		26.5
(0.9)
P 		25.8
(0.7)
P 		35.8
(3)
P 		13.3
(-2.2)
P 		26
B 21
(-3)
A 		26.5
(-1.7)
P 		25.3
(-1.9)
P 		26.5
(-1.7)
P 		45.5
(3)
P 		42.2
(2.2)
P 		25
C 19.2
(-3)
A 		24.3
(0.5)
A 		27.9
(3)
M 		20.2
(-2.3)
P 		25.6
(1.4)
P 		25.2
(1.1)
P 		9
avr 16.7
(-3) 		22.1
(-1.3) 		26.6
(0.1) 		24.2
(-0.6) 		35.6
(3) 		26.9
(0.2) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181425_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12258
Sequence Type Exemplar sequence
Representative Public ID ZC196.2 NCBI
Target Description ZC196.2 /REP_DB=WormBase Gene ID /WP=CE15068 /TR=O01630 /GB=AAB52293.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072850(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072850 NCBI Caenorhabditis elegans ZC196.2 (ZC196.2) mRNA, complete cds. 11/11 None
GENEFINDER00000023109 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8739262:8745022:1 11/11 None
ZC196.2 ENSEMBL cdna:known chromosome:CEL140:V:8742025:8744583:1 gene:ZC196.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8742025-8744584(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC196.2
Entrez Gene 191101 Entrez gene
SwissProt O01630 EMBL-EBI
WormBase CE15068 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5198 structural molecule activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB52292 Hypothetical protein ZC196.3 [Caenorhabditis elegans] ref|NP_505250.1| ZC196.3 [Caenorhabditis elegans] 0.0
blast AAB52293 Hypothetical protein ZC196.2 [Caenorhabditis elegans] ref|NP_505251.1| ZC196.2 [Caenorhabditis elegans] 1.0E-168
blast AAB52293 Hypothetical protein ZC196.2 [Caenorhabditis elegans] ref|NP_505251.1| ZC196.2 [Caenorhabditis elegans] 1.0E-130
blast CAE71571 Hypothetical protein CBG18522 [Caenorhabditis briggsae] 1.0E-36
blast AAB96705 Hypothetical protein F33D11.11 [Caenorhabditis elegans] ref|NP_491704.1| F33D11.11 [Caenorhabditis elegans] 7.0E-20
blast CAE60411 Hypothetical protein CBG04017 [Caenorhabditis briggsae] 6.0E-19
Protein Domains
Database ID Description E-Value
Pfam IPR000535 EMBL-EBI Major sperm protein (MSP) domain 1.8E-32
Pfam IPR000535 EMBL-EBI Major sperm protein (MSP) domain 6.1E-7
Pfam IPR007883 EMBL-EBI Protein of unknown function DUF713 9.9E-109
Sequence
Target Sequence 
>C. ELEGANS:181425_AT
atacttgtccataagtcacctattattcttgggactggaagcagcccagattttagaaat
gatcaaattgcatcagaatcttcgagacaatcatctcctattcaaaatgtttctgatgat
ggcaaaagttcacatcattcaacagccaaacaattacaagaaaataatgaaaattcaaag
agcttaaagtatactaaacaactggttgaagtgcctttaggcgaaaatcaacaagctgat
caaactggaaccacctgtgataaaaaagacgagtttcaaaaaaaaaatcaattggaagtt
gagataaaatttgtggataaaattcatgagatcaagtcccaattagaagacagttttgaa
ttaaaattgaaagaaatggaaatgagactggaggaaaagttcgaaaaaaggatatcaaga
ttaacacaatttatggaaacaataagtttgtcaaatagtcctgggaactctagacgcgtt
tttgaattggac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATACTTGTCCATAAGTCACCTATTA 456 23 355 Antisense
GTCACCTATTATTCTTGGGACTGGA 626 465 369 Antisense
GGGACTGGAAGCAGCCCAGATTTTA 535 477 385 Antisense
GATCAAATTGCATCAGAATCTTCGA 686 421 415 Antisense
GAATCTTCGAGACAATCATCTCCTA 212 329 430 Antisense
TTCACATCATTCAACAGCCAAACAA 140 685 483 Antisense
AACTGGTTGAAGTGCCTTTAGGCGA 107 141 554 Antisense
AAGCTGATCAAACTGGAACCACCTG 109 149 587 Antisense
TTCATGAGATCAAGTCCCAATTAGA 161 687 677 Antisense
TAGTCCTGGGAACTCTAGACGCGTT 174 653 810 Antisense
CTCTAGACGCGTTTTTGAATTGGAC 323 231 822 Antisense
Sequence Source Affymetrix Proprietary Database