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[181423_at]

Description F57C9.7 /REP_DB=WormBase Gene ID /WP=CE11334 /TR=O01819 /GB=AAB54190.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 87      4grp_total > 09      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 4.5
(-3)
A 		12.7
(-1.8)
A 		12.9
(-1.8)
A 		46.4
(3)
A 		42
B 11.2
(-1.6)
A 		5.4
(-3)
A 		6.7
(-2.7)
A 		30.5
(3)
A 		25
C 7.7
(-3)
A 		8.1
(-2.9)
A 		11.1
(-1.9)
A 		25.6
(3)
A 		18
avr 7.8
(-3) 		8.7
(-2.8) 		10.2
(-2.5) 		34.2
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 210
1 2 3 4 5 6 range
A 9
(-2.8)
A 		3.6
(-3)
A 		31.7
(-1.9)
A 		25.9
(-2.1)
A 		117.3
(1.4)
A 		158.6
(3)
M 		155
B 6.2
(-3)
A 		7.3
(-3)
A 		13.3
(-2.8)
A 		66.4
(-1.3)
A 		85.6
(-0.7)
A 		213.4
(3)
P 		207
C 3.7
(-3)
A 		14.1
(-2.6)
A 		6.5
(-2.9)
A 		53.8
(-1.2)
A 		74.3
(-0.4)
A 		168.6
(3)
M 		165
avr 6.3
(-3) 		8.3
(-2.9) 		17.2
(-2.6) 		48.7
(-1.5) 		92.4
(-0) 		180.2
(3) 		174
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 1.6
(-3)
A 		2.8
(-1.6)
A 		3.4
(-0.9)
A 		6.8
(3)
A 		5
B 3.6
(-0.3)
A 		1.3
(-3)
A 		1.6
(-2.7)
A 		6.5
(3)
A 		5
C 2.5
(-2.4)
A 		2.3
(-3)
A 		3.9
(1.8)
A 		4.3
(3)
A 		2
avr 2.6
(-2.2) 		2.1
(-3) 		3
(-1.6) 		5.9
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 78
1 2 3 4 5 6 range
A 1.7
(-2.9)
A 		1.3
(-3)
A 		6.9
(-2.1)
A 		6.6
(-2.1)
A 		35.4
(2.5)
A 		38.6
(3)
M 		37
B 2.2
(-3)
A 		2.4
(-3)
A 		3.2
(-2.9)
A 		17.6
(-1.8)
A 		34.8
(-0.5)
A 		79.6
(3)
P 		77
C 1.4
(-3)
A 		4.3
(-2.7)
A 		1.7
(-3)
A 		10.8
(-2)
A 		24
(-0.5)
A 		56.4
(3)
M 		55
avr 1.8
(-3) 		2.7
(-2.9) 		3.9
(-2.8) 		11.7
(-1.9) 		31.4
(0.1) 		58.2
(3) 		56
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181423_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.497
Sequence Type Exemplar sequence
Representative Public ID F57C9.7 NCBI
Target Description F57C9.7 /REP_DB=WormBase Gene ID /WP=CE11334 /TR=O01819 /GB=AAB54190.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059056(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059056 NCBI Caenorhabditis elegans F57C9.7 (F57C9.7) mRNA, complete cds. 11/11 None
SNAP00000003849 ENSEMBL cdna:SNAP chromosome:CEL140:I:4825170:4826634:-1 11/11 None
GENEFINDER00000003856 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4825170:4826634:-1 11/11 None
F57C9.7 ENSEMBL cdna:known chromosome:CEL140:I:4825170:4826634:-1 gene:F57C9.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4825169-4826634(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F57C9.7
Entrez Gene 172098 Entrez gene
SwissProt O01819 EMBL-EBI
WormBase CE11334 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB54190 Hypothetical protein F57C9.7 [Caenorhabditis elegans] ref|NP_491457.1| F57C9.7 [Caenorhabditis elegans] 0.0
blast CAE60506 Hypothetical protein CBG04125 [Caenorhabditis briggsae] 3.0E-51
Sequence
Target Sequence 
>C. ELEGANS:181423_AT
gcattcattttctttctaccaaacaagaaactctaaagagcaagtggcacaggccgtcga
actaaatatgaaccctttttcggagaagatcgcgagctacaatgctccaaagtccgttca
tggatacagtcgatcttcaattcaaaatcaacattcaggatttattgacaagaacgacat
caaatatccggacgaattattatggcaggaaccatttacccatctcgtcttcttccaatc
cacattcaatgctcacgagtcttccatcaagttcctgaataatgtcgcaaattcaaaaaa
gcaggaaagagactccaaactgatgaaggaaattcgcgaaaggattaagcagaaatcgct
cggacatgtagatgttccaatcgactacacaaacgtggaaagtacatcggagcagccgtc
gactattgatcagtacagccttcctgacctgactagtcaatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCATTCATTTTCTTTCTACCAAACA 545 305 726 Antisense
AGCAAGTGGCACAGGCCGTCGAACT 553 71 764 Antisense
TACAATGCTCCAAAGTCCGTTCATG 142 641 823 Antisense
ATGGCAGGAACCATTTACCCATCTC 411 53 927 Antisense
TTCTTCCAATCCACATTCAATGCTC 101 689 955 Antisense
TTCAATGCTCACGAGTCTTCCATCA 245 685 970 Antisense
GAGTCTTCCATCAAGTTCCTGAATA 374 399 982 Antisense
GATGTTCCAATCGACTACACAAACG 3 411 1096 Antisense
GTACATCGGAGCAGCCGTCGACTAT 28 461 1127 Antisense
GACTATTGATCAGTACAGCCTTCCT 696 371 1146 Antisense
GCCTTCCTGACCTGACTAGTCAATG 84 279 1163 Antisense
Sequence Source Affymetrix Proprietary Database