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[181422_s_at]

Description F52H2.7 /REP_DB=WormBase Gene ID /WP=CE28441 /TR=O17398 /GB=AAB71316.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 31      6grp_high1_10_10 > 03      4grp_highest_8_8 > 32      4grp_high_8_8 > 51      6grp_highest_nonorm > 80      6grp_total > 24      4grp_total > 52      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 235
1 2 3 4 range
A 290.1
(3)
P 		249.2
(1.4)
P 		227.5
(0.5)
P 		138
(-3)
P 		152
B 341.3
(3)
P 		235.2
(-0.6)
P 		253.1
(-0)
P 		165.4
(-3)
P 		176
C 242.5
(0.6)
P 		331.4
(3)
P 		273.2
(1.5)
P 		106.1
(-3)
P 		225
avr 291.3
(3) 		271.9
(2.2) 		251.3
(1.4) 		136.5
(-3) 		155

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 156
1 2 3 4 5 6 range
A 265.8
(3)
P 		266.4
(3)
P 		189.6
(-0.4)
P 		190.9
(-0.3)
P 		129.4
(-3)
P 		142.7
(-2.4)
P 		137
B 245.4
(2.2)
P 		262.4
(3)
P 		177.3
(-0.9)
P 		179.3
(-0.8)
P 		130.1
(-3)
P 		148
(-2.2)
P 		132
C 284.7
(3)
P 		243.7
(1.4)
P 		272.2
(2.5)
P 		146.9
(-2.3)
P 		173.4
(-1.3)
P 		128.4
(-3)
P 		156
avr 265.3
(3) 		257.5
(2.6) 		213
(0.5) 		172.4
(-1.4) 		144.3
(-2.8) 		139.7
(-3) 		126
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 105.6
(3)
P 		54.1
(-0.6)
P 		59.5
(-0.2)
P 		20.2
(-3)
P 		85
B 108.8
(3)
P 		58.1
(-1.1)
P 		58.7
(-1.1)
P 		35.3
(-3)
P 		74
C 80.3
(1.8)
P 		95.3
(3)
P 		95.2
(3)
P 		17.9
(-3)
P 		77
avr 98.2
(3) 		69.2
(0.6) 		71.1
(0.8) 		24.5
(-3) 		74

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 76
1 2 3 4 5 6 range
A 49
(-1.6)
P 		94.8
(3)
P 		41.3
(-2.3)
P 		48.4
(-1.6)
P 		39
(-2.6)
P 		34.7
(-3)
P 		60
B 85.4
(2.7)
P 		87.3
(3)
P 		43
(-3)
P 		47.5
(-2.4)
P 		52.9
(-1.7)
P 		55.2
(-1.3)
P 		44
C 105.5
(3)
P 		74.4
(0.5)
P 		69.3
(0.1)
P 		29.5
(-3)
P 		56.1
(-0.9)
P 		43
(-1.9)
P 		76
avr 80
(2.2) 		85.5
(3) 		51.2
(-1.7) 		41.8
(-3) 		49.3
(-2) 		44.3
(-2.7) 		44
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181422_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18270
Sequence Type Exemplar sequence
Representative Public ID F52H2.7 NCBI
Target Description F52H2.7 /REP_DB=WormBase Gene ID /WP=CE28441 /TR=O17398 /GB=AAB71316.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076063(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076063 NCBI Caenorhabditis elegans F52H2.7 (F52H2.7) mRNA, complete cds. 11/11 A 
SNAP00000036210 ENSEMBL cdna:SNAP chromosome:CEL140:X:2566667:2572647:-1 11/11 None
GENEFINDER00000036213 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:2566667:2572636:-1 11/11 None
F52H2.7 ENSEMBL cdna:known chromosome:CEL140:X:2566551:2572647:-1 gene:F52H2.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2566666-2572589(-) 98.45 100.0
Public Domain and Genome References
Gene Title
Ensembl F52H2.7
Entrez Gene 180558 Entrez gene
SwissProt O17398 EMBL-EBI
WormBase CE31179 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB71316 Hypothetical protein F52H2.7 [Caenorhabditis elegans] ref|NP_508464.2| F52H2.7 [Caenorhabditis elegans] 0.0
blast CAE58858 Hypothetical protein CBG02083 [Caenorhabditis briggsae] 0.0
blast XP_866129 PREDICTED: similar to CG6454-PB, isoform B isoform 6 [Canis familiaris] 4.0E-45
Protein Domains
Database ID Description E-Value
Pfam IPR000008 EMBL-EBI C2 domain 9.8E-23
Pfam IPR000008 EMBL-EBI C2 domain 6.6E-16
Sequence
Target Sequence 
>C. ELEGANS:181422_S_AT
aacgtcagcacgacgcgcgtaggttctcgtggggaacagtgagggatgcgatccggttca
agccaactgtccaatccaacttgacattgaaaattctcaacatcaagcaaggagtggacg
acaataattcttcatccgccaaaagtcgcctacggctaaacacaatcgttgataaggttc
gaagaaaacaacataaggaatatgtatcccatgtggtgtttgaacggcatatgagtctat
caatcggaattcatgagaaccaaagcgccggaaatgctacttcgattgctggagttcatt
tgtcgaattcactgtatccccagtttgttaacaaggatgttattgaaggaatgctaccgg
ttgcaagattttctgatgtttttgtcagggaagatctgacaactgctgtccgcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACGTCAGCACGACGCGCGTAGGTT 644 143 2300 Antisense
GCGCGTAGGTTCTCGTGGGGAACAG 104 283 2314 Antisense
TGAGGGATGCGATCCGGTTCAAGCC 407 567 2339 Antisense
AGCCAACTGTCCAATCCAACTTGAC 22 85 2360 Antisense
TAATTCTTCATCCGCCAAAAGTCGC 582 633 2424 Antisense
GTCGCCTACGGCTAAACACAATCGT 143 475 2444 Antisense
TATCCCATGTGGTGTTTGAACGGCA 64 565 2504 Antisense
GCGCCGGAAATGCTACTTCGATTGC 538 287 2564 Antisense
ATTTGTCGAATTCACTGTATCCCCA 49 19 2597 Antisense
GCTACCGGTTGCAAGATTTTCTGAT 188 303 2652 Antisense
GAAGATCTGACAACTGCTGTCCGCG 192 339 2689 Antisense
Sequence Source Affymetrix Proprietary Database