[Home] | [Total List]

[181421_at]

Description F52B11.7 /REP_DB=WormBase Gene ID /WP=CE18727 /TR=Q9XUE4 /GB=CAB05200.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 82      6grp_high1_10_10 > 29      4grp_highest_8_8 > 48      4grp_high_8_8 > 42      6grp_highest_nonorm > 50      6grp_total > 38      4grp_total > 53      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 404
1 2 3 4 range
A 598.6
(3)
P 		471.9
(1.1)
P 		399.5
(-0)
P 		202.5
(-3)
P 		396
B 606.4
(3)
P 		481.9
(0.3)
P 		378.6
(-2)
P 		334.7
(-3)
P 		272
C 557.7
(3)
P 		433.7
(0.1)
P 		341.1
(-2)
P 		299.1
(-3)
P 		259
avr 587.6
(3) 		462.5
(0.6) 		373.1
(-1.2) 		278.8
(-3) 		309

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 564
1 2 3 4 5 6 range
A 742.7
(3)
P 		579.4
(0.9)
P 		277.8
(-3)
P 		290.7
(-2.8)
P 		521.1
(0.1)
P 		602.3
(1.2)
P 		465
B 668.8
(3)
P 		541.3
(0.8)
P 		323.7
(-3)
P 		348.9
(-2.6)
P 		399.4
(-1.7)
P 		543.8
(0.8)
P 		345
C 841.6
(3)
P 		493.3
(-0.9)
P 		381.2
(-2.2)
P 		307.9
(-3)
P 		464
(-1.2)
P 		555.2
(-0.2)
P 		534
avr 751
(3) 		538
(0.1) 		327.6
(-2.8) 		315.8
(-3) 		461.5
(-1) 		567.1
(0.5) 		435
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 188
1 2 3 4 range
A 217.9
(3)
P 		102.4
(-0.7)
P 		104.4
(-0.6)
P 		29.6
(-3)
P 		188
B 193.4
(3)
P 		119
(-0.7)
P 		87.7
(-2.2)
P 		71.3
(-3)
P 		122
C 184.6
(3)
P 		124.7
(0.3)
P 		118.9
(0.1)
P 		50.4
(-3)
P 		134
avr 198.6
(3) 		115.4
(-0.4) 		103.7
(-0.8) 		50.4
(-3) 		148

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 251
1 2 3 4 5 6 range
A 136.9
(0.2)
P 		206
(3)
P 		60.5
(-3)
P 		73.7
(-2.5)
P 		157.2
(1)
P 		146.6
(0.6)
P 		146
B 232.7
(3)
P 		180.2
(1)
P 		78.6
(-3)
P 		92.4
(-2.5)
P 		162.3
(0.3)
P 		202.8
(1.8)
P 		154
C 311.9
(3)
P 		150.5
(-0.9)
P 		97
(-2.2)
P 		61.9
(-3)
P 		150.2
(-0.9)
P 		185.9
(-0)
P 		250
avr 227.2
(3) 		178.9
(1.1) 		78.7
(-2.9) 		76
(-3) 		156.6
(0.2) 		178.4
(1.1) 		151
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181421_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9537
Sequence Type Exemplar sequence
Representative Public ID F52B11.7 NCBI
Target Description F52B11.7 /REP_DB=WormBase Gene ID /WP=CE18727 /TR=Q9XUE4 /GB=CAB05200.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070302(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070302 NCBI Caenorhabditis elegans F52B11.7 (F52B11.7) mRNA, complete cds. 11/11 None
F52B11.7 ENSEMBL cdna:known chromosome:CEL140:IV:14107711:14108725:-1 gene:F52B11.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000035585 6/11 Cross Hyb Matching Probes None
GENEFINDER00000035593 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14107716-14108594(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F52B11.7
Entrez Gene 178367 Entrez gene
SwissProt Q9XUE4 EMBL-EBI
WormBase CE18727 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CHICKEN:GGAAFFX.983.1.S1_AT similar to bumetanide-sensitive Na-K-Cl cotransport protein splice isoform A gga
Protein Similarities
Method ID Description E-Value
blast CAB05200 Hypothetical protein F52B11.7 [Caenorhabditis elegans] ref|NP_502703.1| F52B11.7 [Caenorhabditis elegans] 1.0E-106
blast CAE71765 Hypothetical protein CBG18757 [Caenorhabditis briggsae] 4.0E-62
blast CAD27923 putative Na-K-Cl symporter [Anopheles gambiae] 6.0E-29
Sequence
Target Sequence 
>C. ELEGANS:181421_AT
tggaatggcggctcttttgtcgaaattccgaatcgattattcggatgtctacgtcatcgc
tgatattggcaagaagccgcgtcaggagacgatgaacacgtggcaatcggtaatcgatcc
gttcatcgcgcaggacggaagctgtccgattggaatgacgacgaagtcggagttgagtgc
tcaacgagacaagacgtatcggcagttgagagctggagagcttctgaatgagcattcgat
aaatgcagatcttattgtgatgactctaccagtaccacgcaaaggaatggttagctcatc
attgtacatgtcgtggctggaagtgatgactcgaaacttgcctccagtactcctcgttcg
cggaaatcaacaatccgtaaatacttcttcttcttctaccgcctcctccccccatcatct
gataattccagctttagcaatcaatccccacttaaaagtgtttccctctcacatatctct
aaaatgtttttttttttttcgttttcttcttaaggcttatgctgctgcggttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGAATGGCGGCTCTTTTGTCGAAA 515 545 30 Antisense
GTCTACGTCATCGCTGATATTGGCA 255 469 76 Antisense
TCGGTAATCGATCCGTTCATCGCGC 303 605 136 Antisense
TGTGATGACTCTACCAGTACCACGC 353 555 285 Antisense
AGCTCATCATTGTACATGTCGTGGC 34 81 322 Antisense
GTACTCCTCGTTCGCGGAAATCAAC 511 457 376 Antisense
CAATCCGTAAATACTTCTTCTTCTT 483 181 400 Antisense
TCCCCCCATCATCTGATAATTCCAG 527 595 436 Antisense
TAGCAATCAATCCCCACTTAAAAGT 510 651 464 Antisense
ACTTAAAAGTGTTTCCCTCTCACAT 86 103 479 Antisense
TTAAGGCTTATGCTGCTGCGGTTCA 499 683 539 Antisense
Sequence Source Affymetrix Proprietary Database