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[181420_at]

Description R10F2.4 /REP_DB=WormBase Gene ID /WP=CE12708 /TR=O01910 /GB=AAB54267.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 16      4grp_total > 43      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 24.1
(-2)
A 		75.9
(3)
A 		32.5
(-1.2)
A 		13.9
(-3)
A 		62
B 59.3
(2.2)
A 		36
(-3)
A 		62.7
(3)
A 		37.1
(-2.8)
A 		27
C 19.5
(-0.9)
A 		36.9
(3)
A 		10
(-3)
A 		34.8
(2.5)
A 		27
avr 34.3
(-1.4) 		49.6
(3) 		35.1
(-1.1) 		28.6
(-3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 87
1 2 3 4 5 6 range
A 74.5
(3)
A 		8.5
(-2.9)
A 		12.9
(-2.5)
A 		7.5
(-3)
A 		54.8
(1.2)
A 		42.1
(0.1)
A 		67
B 46
(-0.2)
A 		70.3
(1.5)
A 		40.7
(-0.6)
A 		92
(3)
A 		6.3
(-3)
A 		22.6
(-1.9)
A 		86
C 37.8
(1.1)
A 		53.3
(3)
A 		23.5
(-0.7)
A 		4.6
(-3)
A 		11.4
(-2.2)
A 		25.4
(-0.4)
A 		49
avr 52.8
(3) 		44
(1.2) 		25.7
(-2.7) 		34.7
(-0.8) 		24.2
(-3) 		30
(-1.8) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 8.8
(-0.2)
A 		16.5
(3)
A 		8.5
(-0.3)
A 		2
(-3)
A 		15
B 18.9
(3)
A 		8.9
(-2.5)
A 		14.5
(0.6)
A 		7.9
(-3)
A 		11
C 6.5
(-0.5)
A 		10.6
(3)
A 		3.5
(-3)
A 		5.9
(-1)
A 		7
avr 11.4
(2.5) 		12
(3) 		8.8
(0.1) 		5.3
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 13.7
(1.8)
A 		3
(-2.5)
A 		2.8
(-2.6)
A 		1.9
(-3)
A 		16.5
(3)
A 		10.3
(0.5)
A 		15
B 16
(0.7)
A 		23.4
(2.7)
A 		9.9
(-1)
A 		24.4
(3)
A 		2.6
(-3)
A 		8.4
(-1.4)
A 		22
C 14
(2.1)
A 		16.3
(3)
A 		6
(-1)
A 		0.9
(-3)
A 		3.7
(-1.9)
A 		8.5
(-0)
A 		15
avr 14.6
(3) 		14.2
(2.7) 		6.2
(-3) 		9.1
(-0.9) 		7.6
(-2) 		9.1
(-0.9) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181420_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6864
Sequence Type Exemplar sequence
Representative Public ID R10F2.4 NCBI
Target Description R10F2.4 /REP_DB=WormBase Gene ID /WP=CE12708 /TR=O01910 /GB=AAB54267.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065238(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065238 NCBI Caenorhabditis elegans R10F2.4 (R10F2.4) mRNA, complete cds. 11/11 None
R10F2.4 ENSEMBL cdna:known chromosome:CEL140:III:2919942:2922498:-1 gene:R10F2.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000016975 1/11 Cross Hyb Matching Probes None
GENEFINDER00000016980 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:2919941-2922498(-) 79.35 100.0
Public Domain and Genome References
Gene Title
Ensembl R10F2.4
Entrez Gene 187785 Entrez gene
SwissProt O01910 EMBL-EBI
WormBase CE12708 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_497639 R10F2.4 [Caenorhabditis elegans] gb|AAB54267.1| Hypothetical protein R10F2.4 [Caenorhabditis elegans] 2.0E-68
Sequence
Target Sequence 
>C. ELEGANS:181420_AT
ccagccaacaacctcattagtcagacaccggaaaaaggtgtcgagaactctttttttgca
ttctgtctttttttttattactacttgttgcgctcaagaaatatgctttccaactctgtg
attaagcacttctcccctcgtagatatacgcgtttgaaacaggggagacgcaggtggggc
gcgcaccctgcgtctccccttcccctacactggctcgctaccgacgacttcaaacgcgca
tatctctgggatgactccgaggtatggggaatgagcctgttcgacaatgcagaggacgag
aatacctatacgaaagaggtggaagagagcaatccggtgacaagaattgatgcttccaaa
aagaaaaagagcttgaaaaaggctatggatgatatgaagcttgacaaacgtccaccaacg
gcggcggcgcctggcggggagaaaaagaagaagacaaagggagaaagtgtgctgaatatg
tttgatgaagccgtggcgagacccgctactgccaagactaaagat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCAGCCAACAACCTCATTAGTCAGA 359 273 31 Antisense
AACTCTTTTTTTGCATTCTGTCTTT 90 141 76 Antisense
TTTTTATTACTACTTGTTGCGCTCA 544 675 102 Antisense
ACTCTGTGATTAAGCACTTCTCCCC 5 101 143 Antisense
CTTCTCCCCTCGTAGATATACGCGT 98 221 159 Antisense
GAAACAGGGGAGACGCAGGTGGGGC 412 353 186 Antisense
CTACCGACGACTTCAAACGCGCATA 352 225 248 Antisense
AACGCGCATATCTCTGGGATGACTC 624 145 263 Antisense
GGGGAATGAGCCTGTTCGACAATGC 296 497 296 Antisense
TTGATGAAGCCGTGGCGAGACCCGC 357 699 512 Antisense
ACCCGCTACTGCCAAGACTAAAGAT 27 91 531 Antisense
Sequence Source Affymetrix Proprietary Database