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[181419_at]

Description W08F4.9 /REP_DB=WormBase Gene ID /WP=CE14728 /TR=O02110 /GB=AAC71173.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 03      4grp_total > 45      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 60.2
(3)
A 		23.9
(-0.9)
A 		7.5
(-2.7)
A 		4.5
(-3)
A 		56
B 45.9
(0.1)
A 		78.4
(3)
A 		24.2
(-1.8)
A 		10.2
(-3)
A 		68
C 44.5
(3)
A 		12.1
(-1.8)
A 		17.1
(-1.1)
A 		4
(-3)
A 		41
avr 50.2
(3) 		38.1
(1.4) 		16.3
(-1.6) 		6.2
(-3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 76
(3)
A 		50.4
(0.9)
A 		25.4
(-1.2)
A 		24.2
(-1.3)
A 		5.6
(-2.8)
A 		3.3
(-3)
A 		73
B 32.5
(0.5)
A 		38.6
(1.3)
A 		9.4
(-2.6)
A 		51.2
(3)
A 		8.8
(-2.7)
A 		6.5
(-3)
A 		45
C 47
(0.8)
A 		67.6
(2.6)
A 		45.7
(0.7)
A 		72.5
(3)
A 		29.3
(-0.7)
A 		2.6
(-3)
A 		70
avr 51.8
(3) 		52.2
(3) 		26.8
(-0.2) 		49.3
(2.6) 		14.6
(-1.7) 		4.1
(-3) 		48
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 21.9
(3)
A 		5.2
(-1.7)
A 		2
(-2.6)
A 		0.7
(-3)
A 		21
B 14.6
(1.3)
A 		19.4
(3)
A 		5.6
(-1.8)
A 		2.2
(-3)
A 		17
C 14.7
(3)
A 		3.5
(-1.8)
A 		5.9
(-0.8)
A 		0.7
(-3)
A 		14
avr 17.1
(3) 		9.4
(0.1) 		4.5
(-1.8) 		1.2
(-3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 14
(1.6)
A 		17.9
(3)
A 		5.5
(-1.4)
A 		6.1
(-1.1)
A 		1.7
(-2.7)
A 		0.8
(-3)
A 		17
B 11.3
(1.8)
A 		12.9
(2.6)
A 		2.3
(-3)
A 		13.6
(3)
A 		3.6
(-2.3)
A 		2.4
(-2.9)
A 		11
C 17.4
(2)
A 		20.6
(3)
A 		11.6
(0.3)
A 		14.6
(1.2)
A 		9.5
(-0.4)
A 		0.9
(-3)
A 		20
avr 14.2
(1.9) 		17.1
(3) 		6.5
(-1.1) 		11.4
(0.8) 		4.9
(-1.7) 		1.4
(-3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181419_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5852
Sequence Type Exemplar sequence
Representative Public ID W08F4.9 NCBI
Target Description W08F4.9 /REP_DB=WormBase Gene ID /WP=CE14728 /TR=O02110 /GB=AAC71173.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061362(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061362 NCBI Caenorhabditis elegans W08F4.9 (W08F4.9) mRNA, complete cds. 11/11 None
SNAP00000029467 ENSEMBL cdna:SNAP chromosome:CEL140:II:582109:582747:-1 11/11 None
GENEFINDER00000029473 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:582109:582747:-1 11/11 None
W08F4.9 ENSEMBL cdna:known chromosome:CEL140:II:582109:582747:-1 gene:W08F4.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:582108-582747(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W08F4.9
Entrez Gene 189301 Entrez gene
SwissProt O02110 EMBL-EBI
WormBase CE14728 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC71173 Hypothetical protein W08F4.9 [Caenorhabditis elegans] ref|NP_493763.1| W08F4.9 [Caenorhabditis elegans] 1.0E-118
blast AAB37877 Hypothetical protein T16A1.8 [Caenorhabditis elegans] ref|NP_494178.1| T16A1.8 [Caenorhabditis elegans] 3.0E-12
blast AAC67480 Hypothetical protein F58E1.3 [Caenorhabditis elegans] ref|NP_494039.1| F58E1.3 [Caenorhabditis elegans] 1.0E-10
Sequence
Target Sequence 
>C. ELEGANS:181419_AT
gacgaaatcgagattcctcacctcacacttatcaagttcctggaccacatccacgaggtt
ttgcatcagaaccggcaaatccacattaacctcgaaaatgggatgaatgaagagataaaa
acgatttgttctctctttgagaacaggaagatcgcgagctgcagcaccacatccacggaa
gttcaggggcaccatctcttcgggactcatccagagaacctggagattgtcgtggtccca
ataagaaaagaactcttggttcaaaattatgaggagctgaaagtcaccaatctcacactg
aacgaggtgttcttgtcaaatagtcgaacgcttcgttcattgcaccactcaatgactgca
aaggatgtcaacttgttcttgaagatctggattcagaactcacagctgagaatcagtgat
cttgttgtagatggtctgaatattgagcatcctgtacatggaactattctccgcggaata
gactttactagatacgaagatcctctggtcgtggatgatggaatggttcaacacgtccaa
attgtgtgcaaaagagggatcaaggcaaaggtttccctcacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGAAATCGAGATTCCTCACCTCA 58 379 28 Antisense
TTATCAAGTTCCTGGACCACATCCA 37 681 56 Antisense
CCACATCCACGAGGTTTTGCATCAG 482 275 72 Antisense
AGAACCGGCAAATCCACATTAACCT 121 71 95 Antisense
CAGCACCACATCCACGGAAGTTCAG 642 203 189 Antisense
TCTTCGGGACTCATCCAGAGAACCT 518 617 224 Antisense
GAACCTGGAGATTGTCGTGGTCCCA 304 345 243 Antisense
GAAAGTCACCAATCTCACACTGAAC 324 361 306 Antisense
GTCGAACGCTTCGTTCATTGCACCA 705 473 350 Antisense
GATACGAAGATCCTCTGGTCGTGGA 585 423 518 Antisense
GATCAAGGCAAAGGTTTCCCTCACC 310 421 585 Antisense
Sequence Source Affymetrix Proprietary Database