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[181417_at]

Description F18A1.8 /REP_DB=WormBase Gene ID /WP=CE04408 /TR=Q19541 /GB=AAB63404.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 97      6grp_total > 97      4grp_total > 09      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 241
1 2 3 4 range
A 102.6
(-2.2)
A 		73
(-3)
A 		110.4
(-2.1)
P 		309.3
(3)
P 		236
B 69.2
(-3)
A 		126.3
(-1)
P 		122.1
(-1.1)
P 		240.7
(3)
P 		172
C 68
(-3)
M 		129.4
(-0.8)
P 		147.7
(-0.1)
P 		232
(3)
P 		164
avr 79.9
(-3) 		109.6
(-2) 		126.7
(-1.4) 		260.7
(3) 		181

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 512
1 2 3 4 5 6 range
A 76.7
(-2.7)
P 		58.8
(-3)
A 		140.4
(-1.8)
P 		201.9
(-0.9)
P 		329.6
(1)
P 		468.7
(3)
P 		410
B 93.3
(-2.3)
P 		40.9
(-3)
P 		112.6
(-2)
P 		102.5
(-2.2)
P 		308.8
(0.7)
P 		477.5
(3)
P 		437
C 34.5
(-3)
A 		103.2
(-2.2)
A 		132.9
(-1.8)
P 		172.8
(-1.4)
P 		278.9
(-0.1)
P 		546.4
(3)
P 		512
avr 68.2
(-3) 		67.6
(-3) 		128.6
(-2.1) 		159.1
(-1.7) 		305.8
(0.3) 		497.5
(3) 		430
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 37.4
(1.4)
A 		15.8
(-3)
A 		28.9
(-0.3)
P 		45.3
(3)
P 		30
B 22.1
(-3)
A 		31.2
(-1.1)
P 		28.3
(-1.7)
P 		51.3
(3)
P 		29
C 22.5
(-3)
M 		37.2
(0)
P 		51.5
(3)
P 		39.1
(0.4)
P 		29
avr 27.3
(-3) 		28.1
(-2.7) 		36.2
(-0) 		45.2
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 170
1 2 3 4 5 6 range
A 14.1
(-3)
P 		20.9
(-2.6)
A 		30.6
(-2)
P 		51.2
(-0.8)
P 		99.4
(2.1)
P 		114.1
(3)
P 		100
B 32.5
(-2.3)
P 		13.6
(-3)
P 		27.3
(-2.5)
P 		27.1
(-2.5)
P 		125.4
(1.1)
P 		178.1
(3)
P 		165
C 12.8
(-3)
A 		31.5
(-2.3)
A 		33.8
(-2.3)
P 		34.7
(-2.2)
P 		90.2
(-0.3)
P 		182.9
(3)
P 		170
avr 19.8
(-3) 		22
(-2.9) 		30.6
(-2.5) 		37.7
(-2.2) 		105
(0.7) 		158.4
(3) 		139
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181417_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5824
Sequence Type Exemplar sequence
Representative Public ID F18A1.8 NCBI
Target Description F18A1.8 /REP_DB=WormBase Gene ID /WP=CE04408 /TR=Q19541 /GB=AAB63404.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063212(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063212 NCBI Caenorhabditis elegans F18A1.8 (F18A1.8) mRNA, complete cds. 11/11 None
F18A1.8 ENSEMBL cdna:known chromosome:CEL140:II:7689723:7690420:-1 gene:F18A1.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7689719-7690417(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F18A1.8
Entrez Gene 184627 Entrez gene
SwissProt Q19541 EMBL-EBI
WormBase CE04408 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB63404 Hypothetical protein F18A1.8 [Caenorhabditis elegans] ref|NP_495613.1| F18A1.8 [Caenorhabditis elegans] 1.0E-94
blast CAE67515 Hypothetical protein CBG13034 [Caenorhabditis briggsae] 4.0E-59
Sequence
Target Sequence 
>C. ELEGANS:181417_AT
ttcgcatattactttggcatccacaccatttaaaaaaagaatcgatcagaattcgttaaa
aaccgactcggatattgaaaaagacacaaatatcgcacacaaatgcgctgaacggttcaa
ctacaatacaaatcttcacagaaaagtgacgttgagcgatcgtttcgagttggcagccct
tggatacgaaatgaaagcaaagccgagaacaatcatcgaaaaacataatgactgcgacga
gtttcattttatctatagaaaagaaaagaagaatgattatggaactggctcaccactttc
agccggattgagcctatctaatccgttgccagctggacgtggattcctctctccagcgat
tcagaataccagcaaccagttcaccttttctggaagtccaagaattaccccccagaagca
caccccagtatcggccaatcacaagccagcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCGCATATTACTTTGGCATCCACA 692 693 33 Antisense
GAGCGATCGTTTCGAGTTGGCAGCC 273 385 186 Antisense
GTTGGCAGCCCTTGGATACGAAATG 426 435 201 Antisense
TTATGGAACTGGCTCACCACTTTCA 404 681 309 Antisense
CACTTTCAGCCGGATTGAGCCTATC 59 197 326 Antisense
TCCGTTGCCAGCTGGACGTGGATTC 354 591 354 Antisense
TCCTCTCTCCAGCGATTCAGAATAC 119 591 377 Antisense
AGAATACCAGCAACCAGTTCACCTT 709 75 395 Antisense
CAGTTCACCTTTTCTGGAAGTCCAA 616 203 409 Antisense
TGGAAGTCCAAGAATTACCCCCCAG 305 547 423 Antisense
AGTATCGGCCAATCACAAGCCAGCC 680 61 459 Antisense
Sequence Source Affymetrix Proprietary Database