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[181416_s_at]

Description W09B6.4 /REP_DB=WormBase Gene ID /WP=CE14740 /TR=Q9GZI5 /GB=AAG00031.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 79      6grp_high1_10_10 > 85      4grp_highest_8_8 > 05      4grp_high_8_8 > 30      6grp_highest_nonorm > 82      6grp_total > 98      4grp_total > 25      6grp_highest_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 151
1 2 3 4 range
A 278
(-3)
P 		428.5
(3)
P 		350
(-0.1)
P 		420.2
(2.7)
P 		151
B 301.2
(-3)
P 		333.2
(-0.4)
P 		333.9
(-0.4)
P 		376.1
(3)
P 		75
C 368.4
(3)
P 		319.3
(-3)
P 		367.5
(2.9)
P 		346
(0.3)
P 		49
avr 315.9
(-3) 		360.3
(1.1) 		350.5
(0.2) 		380.8
(3) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 332
1 2 3 4 5 6 range
A 308.1
(-3)
P 		350.6
(0.3)
P 		386.2
(3)
P 		382.9
(2.7)
P 		340.2
(-0.5)
P 		374.9
(2.1)
P 		78
B 178.6
(-3)
P 		288.1
(-0.6)
P 		368.9
(1.2)
P 		217.2
(-2.1)
P 		394.9
(1.8)
P 		450.4
(3)
P 		272
C 251.3
(-3)
P 		332.9
(-1.1)
P 		329.1
(-1.2)
P 		318.9
(-1.4)
P 		442.9
(1.4)
P 		510.5
(3)
P 		259
avr 246
(-3) 		323.9
(-0.7) 		361.4
(0.5) 		306.3
(-1.2) 		392.7
(1.4) 		445.3
(3) 		199
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 101.2
(3)
P 		93
(1.8)
P 		91.5
(1.5)
P 		61.5
(-3)
P 		40
B 96.1
(3)
P 		82.3
(-1.4)
P 		77.4
(-3)
P 		80.1
(-2.1)
P 		19
C 122
(2.5)
P 		91.8
(-0.1)
P 		128.1
(3)
P 		58.3
(-3)
P 		70
avr 106.4
(3) 		89
(0.4) 		99
(1.9) 		66.6
(-3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 114
1 2 3 4 5 6 range
A 56.8
(-3)
P 		124.7
(3)
P 		84.1
(-0.6)
P 		97.1
(0.6)
P 		102.7
(1.1)
P 		91.3
(0)
P 		68
B 62.1
(-2.8)
P 		95.9
(-0.9)
P 		89.6
(-1.3)
P 		57.5
(-3)
P 		160.4
(2.6)
P 		168
(3)
P 		111
C 93.1
(-1.4)
P 		101.6
(-0.9)
P 		83.8
(-1.9)
P 		64.1
(-3)
P 		143.3
(1.4)
P 		170.9
(3)
P 		107
avr 70.7
(-3) 		107.4
(0) 		85.8
(-1.8) 		72.9
(-2.8) 		135.5
(2.3) 		143.4
(3) 		73
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181416_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5849
Sequence Type Exemplar sequence
Representative Public ID W09B6.4 NCBI
Target Description W09B6.4 /REP_DB=WormBase Gene ID /WP=CE14740 /TR=Q9GZI5 /GB=AAG00031.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061519(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061519 NCBI Caenorhabditis elegans W09B6.4 (W09B6.4) mRNA, complete cds. 11/11 None
GENEFINDER00000001943 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1132374:1134149:-1 10/11 None
W09B6.4 ENSEMBL cdna:known chromosome:CEL140:II:1132367:1134157:-1 gene:W09B6.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1132372-1135170(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W09B6.4
Entrez Gene 173499 Entrez gene
WormBase CE39038 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG00031 Hypothetical protein W09B6.4 [Caenorhabditis elegans] ref|NP_493920.2| W09B6.4 [Caenorhabditis elegans] 1.0E-118
blast AAG00031 Hypothetical protein W09B6.4 [Caenorhabditis elegans] ref|NP_493920.2| W09B6.4 [Caenorhabditis elegans] 1.0E-105
blast CAE74111 Hypothetical protein CBG21771 [Caenorhabditis briggsae] 1.0E-53
blast CAE74111 Hypothetical protein CBG21771 [Caenorhabditis briggsae] 2.0E-50
Sequence
Target Sequence 
>C. ELEGANS:181416_S_AT
tcgttggattttccagctacaccgcaccttgagcacctcacaaattccacgtttaaagtg
aaaaaatccgcaaacccggagattttcgagtgtcagacgacggtcttcgataaaaaggga
aatttgacgattatggtacgacttttgactcgaaaattcaaatttttcgccgatcgcatg
ctgaaagaccaaatcatcacaatgccgccatctggcacgaagccaacattcaaaacggtg
aaaaaagtggaaaattcggcggaaaactcgatttctgccggaatttcgggaatttctttg
ggttcagagagcggaaaagcagccatggatttgccgttctttgtgtcccgacaagaagat
ggagtagctcttcgtgacgccgccaccaaaaaaatccgagttggcggccaaatcgtgtac
gaacccgatcaggaggacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGTTGGATTTTCCAGCTACACCGC 537 597 619 Antisense
GCACCTTGAGCACCTCACAAATTCC 436 315 642 Antisense
GCAAACCCGGAGATTTTCGAGTGTC 689 123 688 Antisense
GAGTGTCAGACGACGGTCTTCGATA 589 401 706 Antisense
AATTTTTCGCCGATCGCATGCTGAA 266 175 779 Antisense
TCATCACAATGCCGCCATCTGGCAC 231 619 812 Antisense
AACTCGATTTCTGCCGGAATTTCGG 615 141 883 Antisense
CAGCCATGGATTTGCCGTTCTTTGT 37 203 938 Antisense
AGATGGAGTAGCTCTTCGTGACGCC 545 67 975 Antisense
GTTGGCGGCCAAATCGTGTACGAAC 311 435 1018 Antisense
GTGTACGAACCCGATCAGGAGGACG 62 487 1033 Antisense
Sequence Source Affymetrix Proprietary Database