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[181415_at]

Description B0507.1 /REP_DB=WormBase Gene ID /WP=CE07760 /TR=Q22886 /GB=AAB04822.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 09      6grp_high1_10_10 > 90      4grp_highest_8_8 > 02      4grp_high_8_8 > 46      6grp_highest_nonorm > 90      6grp_total > 0      4grp_total > 49      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 409
1 2 3 4 range
A 79.8
(-3)
P 		464.8
(3)
P 		411.8
(2.2)
P 		82.8
(-3)
P 		385
B 113.2
(-2.7)
P 		341.4
(1.1)
P 		450.6
(3)
P 		97.2
(-3)
P 		353
C 68.3
(-3)
P 		477.4
(3)
P 		420.9
(2.2)
P 		86.7
(-2.7)
P 		409
avr 87.1
(-3) 		427.9
(3) 		427.8
(3) 		88.9
(-3) 		341

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 174
1 2 3 4 5 6 range
A 105.4
(-3)
P 		255.6
(3)
P 		121.6
(-2.4)
P 		207.6
(1.1)
P 		237.2
(2.3)
P 		190.9
(0.4)
P 		150
B 99.4
(-3)
P 		254
(3)
P 		166.5
(-0.4)
P 		200.5
(0.9)
P 		216.9
(1.6)
P 		152.8
(-0.9)
P 		155
C 81.2
(-3)
P 		216.9
(3)
P 		188.9
(1.8)
P 		215.2
(2.9)
P 		192.5
(1.9)
P 		189.6
(1.8)
P 		136
avr 95.3
(-3) 		242.2
(3) 		159
(-0.4) 		207.8
(1.6) 		215.5
(1.9) 		177.8
(0.4) 		147
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 135
1 2 3 4 range
A 29.1
(-1.9)
P 		100.9
(2.6)
P 		107.7
(3)
P 		12.1
(-3)
P 		96
B 36.1
(-1.9)
P 		84.3
(1.6)
P 		104.4
(3)
P 		20.7
(-3)
P 		84
C 22.6
(-2.6)
P 		137.3
(2.6)
P 		146.7
(3)
P 		14.6
(-3)
P 		132
avr 29.3
(-2.2) 		107.5
(2.3) 		119.6
(3) 		15.8
(-3) 		104

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 19.4
(-3)
P 		90.9
(3)
P 		26.5
(-2.4)
P 		52.7
(-0.2)
P 		71.6
(1.4)
P 		46.5
(-0.7)
P 		72
B 34.6
(-3)
P 		84.6
(2.6)
P 		40.4
(-2.3)
P 		53.1
(-0.9)
P 		88.1
(3)
P 		57
(-0.5)
P 		54
C 30.1
(-3)
P 		66.2
(3)
P 		48.1
(-0)
P 		43.3
(-0.8)
P 		62.3
(2.4)
P 		63.5
(2.6)
P 		36
avr 28
(-3) 		80.6
(3) 		38.3
(-1.8) 		49.7
(-0.5) 		74
(2.2) 		55.7
(0.2) 		53
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181415_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12457
Sequence Type Exemplar sequence
Representative Public ID B0507.1 NCBI
Target Description B0507.1 /REP_DB=WormBase Gene ID /WP=CE07760 /TR=Q22886 /GB=AAB04822.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072861(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072861 NCBI Caenorhabditis elegans B0507.1 (B0507.1) mRNA, complete cds. 11/11 A 
SNAP00000006060 ENSEMBL cdna:SNAP chromosome:CEL140:V:8779247:8781745:1 11/11 None
GENEFINDER00000006062 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8779247:8781745:1 11/11 None
B0507.1 ENSEMBL cdna:known chromosome:CEL140:V:8779243:8781880:1 gene:B0507.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8779247-8781746(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0507.1
Entrez Gene 179256 Entrez gene
SwissProt Q22886 EMBL-EBI
WormBase CE28815 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB04822 Hypothetical protein B0507.1 [Caenorhabditis elegans] ref|NP_505262.1| B0507.1 [Caenorhabditis elegans] 0.0
blast CAE57750 Hypothetical protein CBG00767 [Caenorhabditis briggsae] 0.0
blast CAE68671 Hypothetical protein CBG14575 [Caenorhabditis briggsae] 1.0E-14
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505262.1 1 7-24
B0507.1 1 7-24
SNAP00000006060 1 7-24
GENEFINDER00000006062 1 7-24
Sequence
Target Sequence 
>C. ELEGANS:181415_AT
tgaatcgtcatatcctccagactatggatgtaacaaatgtcccgtagattattactgtca
tagggattctgtagccaccgagaaatctatttgctgtccaaagccttgtgtttcactcga
agacatctaccacgaaggccagtgcttttcaatggcgtactatggagacagctgtcacat
ttcgtcgcaatgcgtctactcaaagagtcccgacgccgccgaagagtacgctgaagttgc
aaaaatggaatgtgccagaagtatttgttcgtgtccagcaggtttcagttatgctgacgg
acagtgcaaaagaattatgtgctcaattggcctaagaggagaaccatcagtagacaagtc
agggcaattaattcgttgtgagagatccagtgattgtagtatgggtcatatgtgtgatcc
aaatacccatgtttgctgcaagggaactaacagatgtccaaaggattatgttgagaccgg
agagcaatgcacagatgacaattgtcgtggaataaaccaaatctgtcaccgaaccaaaaa
tggcaaagccaaaatctgttgcacttatgatgatgtgacaatgtctgccatgcggga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAATCGTCATATCCTCCAGACTAT 639 573 1317 Antisense
GTCATAGGGATTCTGTAGCCACCGA 450 453 1373 Antisense
GCCACCGAGAAATCTATTTGCTGTC 220 279 1390 Antisense
GCTGTCCAAAGCCTTGTGTTTCACT 424 295 1409 Antisense
GTTTCACTCGAAGACATCTACCACG 25 451 1426 Antisense
TACCACGAAGGCCAGTGCTTTTCAA 512 649 1444 Antisense
GGAGACAGCTGTCACATTTCGTCGC 633 519 1480 Antisense
ATTTCGTCGCAATGCGTCTACTCAA 623 15 1495 Antisense
ACGCCGCCGAAGAGTACGCTGAAGT 401 91 1529 Antisense
GTTCGTGTCCAGCAGGTTTCAGTTA 591 441 1583 Antisense
ATGTGACAATGTCTGCCATGCGGGA 9 51 1889 Antisense
Sequence Source Affymetrix Proprietary Database