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[181414_at]

Description F41C3.1 /REP_DB=WormBase Gene ID /WP=CE02728 /TR=Q20266 /GB=AAC46808.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 26      6grp_high1_10_10 > 52      4grp_high_8_8 > 14      6grp_highest_nonorm > 52      6grp_total > 62      4grp_total > 10      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 249
1 2 3 4 range
A 67.2
(-3)
P 		157.2
(-0.8)
M 		118.2
(-1.7)
P 		309.6
(3)
P 		242
B 67.2
(-3)
P 		116.7
(-0.9)
P 		91.3
(-2)
M 		208.9
(3)
P 		142
C 119.3
(-1.8)
P 		71.9
(-3)
A 		88.3
(-2.6)
P 		315.8
(3)
P 		244
avr 84.6
(-3) 		115.3
(-2) 		99.3
(-2.5) 		278.1
(3) 		194

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1115
1 2 3 4 5 6 range
A 210.3
(-3)
P 		883.2
(0.7)
P 		1317.4
(3)
P 		1021.7
(1.4)
P 		536.5
(-1.2)
P 		202.5
(-3)
P 		1115
B 254.6
(-2.7)
P 		769.3
(1)
P 		1042.9
(3)
P 		732.4
(0.8)
P 		556.8
(-0.5)
P 		207.4
(-3)
P 		836
C 274.4
(-3)
P 		701.9
(0.6)
P 		957.4
(2.8)
P 		982.6
(3)
P 		444.8
(-1.6)
P 		298.6
(-2.8)
P 		708
avr 246.4
(-2.9) 		784.8
(0.8) 		1105.9
(3) 		912.2
(1.7) 		512.7
(-1.1) 		236.2
(-3) 		870
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 24.5
(-3)
P 		34.1
(-0.2)
M 		30.9
(-1.2)
P 		45.3
(3)
P 		21
B 21.4
(-2.9)
P 		28.8
(-1)
P 		21.2
(-3)
M 		44.5
(3)
P 		23
C 39.5
(0.5)
P 		20.7
(-3)
A 		30.8
(-1.1)
P 		53.2
(3)
P 		33
avr 28.5
(-2.7) 		27.9
(-2.9) 		27.6
(-3) 		47.7
(3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 275
1 2 3 4 5 6 range
A 38.8
(-3)
P 		314.1
(3)
P 		286.9
(2.4)
P 		259.1
(1.8)
P 		161.9
(-0.3)
P 		49.3
(-2.8)
P 		275
B 88.6
(-2.6)
P 		256.1
(3)
P 		253.3
(2.9)
P 		194
(0.9)
P 		226.2
(2)
P 		77.3
(-3)
P 		179
C 101.7
(-2.9)
P 		214.2
(1.8)
P 		243.7
(3)
P 		197.6
(1.1)
P 		143.9
(-1.2)
P 		100
(-3)
P 		144
avr 76.4
(-3) 		261.5
(3) 		261.3
(3) 		216.9
(1.6) 		177.3
(0.3) 		75.5
(-3) 		186
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181414_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5166
Sequence Type Exemplar sequence
Representative Public ID F41C3.1 NCBI
Target Description F41C3.1 /REP_DB=WormBase Gene ID /WP=CE02728 /TR=Q20266 /GB=AAC46808.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062449(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062449 NCBI Caenorhabditis elegans F41C3.1 (F41C3.1) mRNA, complete cds. 11/11 None
SNAP00000035623 ENSEMBL cdna:SNAP chromosome:CEL140:II:4749964:4752928:1 11/11 None
GENEFINDER00000035632 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4751832:4752928:1 11/11 None
F41C3.1 ENSEMBL cdna:known chromosome:CEL140:II:4752374:4752928:1 gene:F41C3.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4752372-4752927(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F41C3.1
Entrez Gene 185595 Entrez gene
SwissProt Q20266 EMBL-EBI
WormBase CE02728 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC46809 Hypothetical protein F41C3.2 [Caenorhabditis elegans] ref|NP_494849.1| F41C3.2 [Caenorhabditis elegans] 0.0
blast CAE73219 Hypothetical protein CBG20625 [Caenorhabditis briggsae] 0.0
blast AAC46808 Hypothetical protein F41C3.1 [Caenorhabditis elegans] ref|NP_494850.1| F41C3.1 [Caenorhabditis elegans] 1.0E-68
blast AAC46808 Hypothetical protein F41C3.1 [Caenorhabditis elegans] ref|NP_494850.1| F41C3.1 [Caenorhabditis elegans] 2.0E-68
blast AAC46808 Hypothetical protein F41C3.1 [Caenorhabditis elegans] ref|NP_494850.1| F41C3.1 [Caenorhabditis elegans] 2.0E-67
blast AAF40012 Hypothetical protein ZK973.8 [Caenorhabditis elegans] ref|NP_491356.1| ZK973.8 [Caenorhabditis elegans] 2.0E-34
blast CAE60488 Hypothetical protein CBG04102 [Caenorhabditis briggsae] 6.0E-29
blast AAF40012 Hypothetical protein ZK973.8 [Caenorhabditis elegans] ref|NP_491356.1| ZK973.8 [Caenorhabditis elegans] 4.0E-25
Protein Domains
Database ID Description E-Value
Pfam IPR009676 EMBL-EBI Protein of unknown function DUF1265 2.8E-29
Pfam IPR009676 EMBL-EBI Protein of unknown function DUF1265 2.8E-29
Pfam IPR009676 EMBL-EBI Protein of unknown function DUF1265 2.8E-29
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000035623 11 35-57,96-115,124-146,156-178,212-234,278-297,310-332,347-369,374-396,411-433,445-464
Sequence
Target Sequence 
>C. ELEGANS:181414_AT
ttgtaccactggaagttagcccgcttttcccaacaattgagaagcacatgatggaagaac
ttgttcagaactatgaggacttgcactacatcaagcagatgctcctggttactcacaaca
gcaggatcacaaccttgcttggatcatgtcaggccacaatcatcagctttcacttcgatg
atttcatcaaggacatgcgggagaatccaaatccagcgttcacagaacttgttgaagatc
acgtttggcgcagggaacgtactagtgtgatgagctcacttctcaaaacctacgcaaaaa
gtcagtgtgtccgtagcttcgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGTACCACTGGAAGTTAGCCCGCT 79 667 47 Antisense
CCCGCTTTTCCCAACAATTGAGAAG 695 257 66 Antisense
CAAGCAGATGCTCCTGGTTACTCAC 568 185 138 Antisense
GCAGGATCACAACCTTGCTTGGATC 295 311 167 Antisense
GCTTGGATCATGTCAGGCCACAATC 436 307 183 Antisense
CAGGCCACAATCATCAGCTTTCACT 283 209 196 Antisense
GGGAGAATCCAAATCCAGCGTTCAC 179 495 245 Antisense
GTTGAAGATCACGTTTGGCGCAGGG 442 437 277 Antisense
GGCGCAGGGAACGTACTAGTGTGAT 31 543 293 Antisense
CTCACTTCTCAAAACCTACGCAAAA 183 227 321 Antisense
AAAGTCAGTGTGTCCGTAGCTTCGT 564 121 344 Antisense
Sequence Source Affymetrix Proprietary Database