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[181413_at]

Description F31E8.4 /REP_DB=WormBase Gene ID /WP=CE07167 /TR=Q19936 /GB=AAA98020.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 36      6grp_high1_10_10 > 63      4grp_highest_8_8 > 33      4grp_high_8_8 > 58      6grp_highest_nonorm > 64      6grp_total > 50      4grp_total > 61      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 543
1 2 3 4 range
A 798
(3)
P 		463.1
(-1.5)
P 		639
(0.8)
P 		356.3
(-3)
P 		442
B 665.4
(3)
P 		535.5
(1.1)
P 		535
(1.1)
P 		254.8
(-3)
P 		411
C 649.2
(3)
P 		611.1
(2.3)
P 		646.9
(3)
P 		336.9
(-3)
P 		312
avr 704.2
(3) 		536.6
(0.4) 		607
(1.5) 		316
(-3) 		388

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 529
1 2 3 4 5 6 range
A 741.6
(-2.3)
P 		759.5
(-1.6)
P 		879.6
(3)
P 		874.6
(2.8)
P 		762.8
(-1.5)
P 		723.6
(-3)
P 		156
B 918.6
(-0.5)
P 		732.2
(-3)
P 		1177.5
(3)
P 		1045.3
(1.2)
P 		736.5
(-2.9)
P 		808.9
(-2)
P 		445
C 732.1
(-1.7)
P 		822.7
(-0.2)
P 		958.7
(1.9)
P 		1026.3
(3)
P 		648.7
(-3)
P 		787.5
(-0.8)
P 		378
avr 797.4
(-1.3) 		771.5
(-1.8) 		1005.3
(3) 		982.1
(2.5) 		716
(-3) 		773.3
(-1.8) 		289
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 238
1 2 3 4 range
A 290.5
(3)
P 		100.5
(-1.8)
P 		167.1
(-0.1)
P 		52.1
(-3)
P 		238
B 212.2
(3)
P 		132.3
(-0)
P 		124
(-0.4)
P 		54.3
(-3)
P 		158
C 214.9
(2.6)
P 		175.7
(1.2)
P 		225.5
(3)
P 		56.8
(-3)
P 		169
avr 239.2
(3) 		136.2
(-0.3) 		172.2
(0.8) 		54.4
(-3) 		185

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 183
1 2 3 4 5 6 range
A 136.7
(-3)
P 		270.1
(3)
P 		191.6
(-0.5)
P 		221.8
(0.8)
P 		230.2
(1.2)
P 		176.2
(-1.2)
P 		133
B 319.6
(3)
P 		243.7
(-3)
P 		285.9
(0.3)
P 		276.9
(-0.4)
P 		299.2
(1.4)
P 		301.6
(1.6)
P 		76
C 271.3
(3)
P 		251
(1.1)
P 		244
(0.5)
P 		206.4
(-3)
P 		209.9
(-2.7)
P 		263.6
(2.3)
P 		65
avr 242.5
(-0.7) 		254.9
(3) 		240.5
(-1.3) 		235
(-3) 		246.4
(0.4) 		247.1
(0.6) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181413_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4527
Sequence Type Exemplar sequence
Representative Public ID F31E8.4 NCBI
Target Description F31E8.4 /REP_DB=WormBase Gene ID /WP=CE07167 /TR=Q19936 /GB=AAA98020.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062990(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062990 NCBI Caenorhabditis elegans F31E8.4 (F31E8.4) mRNA, complete cds. 11/11 None
SNAP00000019074 ENSEMBL cdna:SNAP chromosome:CEL140:II:6799366:6800074:-1 11/11 None
GENEFINDER00000019083 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6799366:6800074:-1 11/11 None
F31E8.4 ENSEMBL cdna:known chromosome:CEL140:II:6799366:6800074:-1 gene:F31E8.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6799360-6800069(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F31E8.4
Entrez Gene 174118 Entrez gene
SwissProt Q19936 EMBL-EBI
WormBase CE07167 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6825 copper ion transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5375 copper ion transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_495391 F31E8.4 [Caenorhabditis elegans] gb|AAA98020.1| Hypothetical protein F31E8.4 [Caenorhabditis elegans] 1.0E-86
blast CAE65972 Hypothetical protein CBG11156 [Caenorhabditis briggsae] 6.0E-83
blast NP_495391 F31E8.4 [Caenorhabditis elegans] gb|AAA98020.1| Hypothetical protein F31E8.4 [Caenorhabditis elegans] 2.0E-79
blast CAE65972 Hypothetical protein CBG11156 [Caenorhabditis briggsae] 6.0E-76
blast EAL32310 GA17816-PA [Drosophila pseudoobscura] 2.0E-16
blast AAM75086 RH42635p [Drosophila melanogaster] 3.0E-14
Protein Domains
Database ID Description E-Value
Pfam IPR007274 EMBL-EBI Ctr copper transporter 2.8E-66
Pfam IPR007274 EMBL-EBI Ctr copper transporter 2.2E-60
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495391.1 3 20-42,106-128,132-154
F31E8.4 3 20-42,106-128,132-154
SNAP00000019074 3 20-42,106-128,132-154
GENEFINDER00000019083 3 20-42,109-131,141-163
Sequence
Target Sequence 
>C. ELEGANS:181413_AT
gacatggatatgactctgcactttggagaacgcgagaagattctcttcagctggtggaaa
actggatctctgtctggaatggcagtctccatgcttataaccttccttctctgtattctc
tacgaagccatcaaatcattccgttacttcctcgcagtatggaataatcaaaagagacaa
cagagacatgcagaagcatccattacaaatccacaaaatagtggaggagacaatatttct
gaagattctattcacatcgcaccacttgttcagttatctggatttacaaaacggctgttc
acctcgtaccggcttgctcaaggagctctctacggacttcaggctctccttgcttacact
cttatgctgattgctatgacttacaacatgaacctaattctctcaattgttgtcggagaa
gctgttggatatttcttgttcactg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACATGGATATGACTCTGCACTTTG 585 369 16 Antisense
GAAGATTCTCTTCAGCTGGTGGAAA 53 339 51 Antisense
AACTGGATCTCTGTCTGGAATGGCA 576 143 75 Antisense
GCAGTCTCCATGCTTATAACCTTCC 505 311 97 Antisense
TCAAATCATTCCGTTACTTCCTCGC 76 629 146 Antisense
TGAAGATTCTATTCACATCGCACCA 432 575 255 Antisense
ATCGCACCACTTGTTCAGTTATCTG 429 37 271 Antisense
TCGTACCGGCTTGCTCAAGGAGCTC 48 603 319 Antisense
TCAAGGAGCTCTCTACGGACTTCAG 181 629 333 Antisense
CTCCTTGCTTACACTCTTATGCTGA 476 235 361 Antisense
GCTGTTGGATATTTCTTGTTCACTG 453 295 436 Antisense
Sequence Source Affymetrix Proprietary Database