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[181412_at]

Description K09F6.7 /REP_DB=WormBase Gene ID /WP=CE12036 /TR=O16734 /GB=AAB66197.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 64      4grp_total > 28      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 87
1 2 3 4 range
A 36
(-2.1)
A 		33.8
(-2.3)
A 		25.7
(-3)
A 		95.3
(3)
P 		70
B 51
(3)
A 		12.7
(-2.3)
A 		32.3
(0.4)
A 		8
(-3)
A 		43
C 40.7
(-1)
A 		77.3
(3)
A 		23
(-3)
A 		45.9
(-0.5)
A 		54
avr 42.6
(1.1) 		41.3
(0.8) 		27
(-3) 		49.7
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 44.5
(0.3)
A 		41.2
(0)
A 		73.5
(3)
P 		70.3
(2.7)
P 		8.7
(-3)
A 		48.8
(0.7)
A 		65
B 43.8
(-3)
A 		61.2
(0.1)
A 		73
(2.2)
P 		51
(-1.7)
A 		60
(-0.1)
A 		77.6
(3)
P 		34
C 53.6
(-2.5)
A 		51.3
(-3)
A 		81.3
(3)
P 		71.1
(1)
P 		51.7
(-2.9)
P 		54.3
(-2.4)
P 		30
avr 47.3
(-1.8) 		51.2
(-1.1) 		75.9
(3) 		64.1
(1) 		40.1
(-3) 		60.2
(0.4) 		36
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 13.1
(2.3)
A 		7.3
(-2.5)
A 		6.7
(-3)
A 		13.9
(3)
P 		7
B 16.2
(3)
A 		3.1
(-2.4)
A 		7.5
(-0.6)
A 		1.7
(-3)
A 		15
C 13.5
(-0.6)
A 		22.2
(3)
A 		8
(-2.9)
A 		7.7
(-3)
A 		15
avr 14.3
(3) 		10.9
(0) 		7.4
(-3) 		7.8
(-2.7) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 8.2
(-0.8)
A 		14.7
(1.8)
A 		16
(2.3)
P 		17.8
(3)
P 		2.6
(-3)
A 		11.9
(0.7)
A 		15
B 15.2
(-2.3)
A 		20.4
(-0.3)
A 		17.7
(-1.4)
P 		13.5
(-3)
A 		24.4
(1.2)
A 		28.9
(3)
P 		15
C 19.9
(2.3)
A 		15.7
(-1.7)
A 		20.7
(3)
P 		14.3
(-3)
P 		16.7
(-0.8)
P 		18.2
(0.7)
P 		6
avr 14.4
(-3) 		16.9
(-0.2) 		18.1
(1.2) 		15.2
(-2.1) 		14.6
(-2.8) 		19.7
(3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181412_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4727
Sequence Type Exemplar sequence
Representative Public ID K09F6.7 NCBI
Target Description K09F6.7 /REP_DB=WormBase Gene ID /WP=CE12036 /TR=O16734 /GB=AAB66197.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061826(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061826 NCBI Caenorhabditis elegans K09F6.7 (K09F6.7) mRNA, complete cds. 11/11 None
SNAP00000009229 ENSEMBL cdna:SNAP chromosome:CEL140:II:2290918:2292128:-1 11/11 None
K09F6.7 ENSEMBL cdna:known chromosome:CEL140:II:2290918:2292128:-1 gene:K09F6.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000009244 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2290916-2292127(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K09F6.7
Entrez Gene 187234 Entrez gene
SwissProt O16734 EMBL-EBI
WormBase CE12036 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB66197 Hypothetical protein K09F6.7 [Caenorhabditis elegans] ref|NP_494227.1| K09F6.7 [Caenorhabditis elegans] 1.0E-174
blast AAB66082 Hypothetical protein B0281.3 [Caenorhabditis elegans] ref|NP_494232.1| B0281.3 [Caenorhabditis elegans] 5.0E-73
blast AAB66086 Hypothetical protein B0281.8 [Caenorhabditis elegans] ref|NP_494234.1| B0281.8 [Caenorhabditis elegans] 3.0E-46
Protein Domains
Database ID Description E-Value
Pfam IPR001841 EMBL-EBI Zn-finger, RING 1.8E-9
Sequence
Target Sequence 
>C. ELEGANS:181412_AT
gcaaacatcaccctgattacttggtggaaaccgtatgcgtggaagaggattgttccgaat
cgggaaaatacatgtgccgcaaatgtgtatcgactctatctcatttgcatcatacgaaaa
aatcgttgattgcggaaatggaaaaatcacgcgaattgcttcaggggaggataaatcgct
tgaataagacaataggcgagattgatcaagatgttcgaaagctcaggatgtcacaaattg
cgtttcgcgaaggtggaaataattaccaacaaaaagcaaatgagataactactttttact
ccagaattcgtgaaatggttaatgaacgtgaaaaggaggcactcgtcaaattaaaggaag
tggcaaagtcaattttggatgaaaatgatagtgcattacctccgctgttaagatctcacc
aaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAAACATCACCCTGATTACTTGGT 95 319 293 Antisense
GGTGGAAACCGTATGCGTGGAAGAG 467 495 315 Antisense
GTGCCGCAAATGTGTATCGACTCTA 704 477 366 Antisense
ATCGACTCTATCTCATTTGCATCAT 186 37 381 Antisense
AAATCACGCGAATTGCTTCAGGGGA 289 117 436 Antisense
GATGTTCGAAAGCTCAGGATGTCAC 690 409 502 Antisense
GGATGTCACAAATTGCGTTTCGCGA 678 513 518 Antisense
ACTACTTTTTACTCCAGAATTCGTG 494 1 580 Antisense
AAGGAGGCACTCGTCAAATTAAAGG 40 161 625 Antisense
AAATGATAGTGCATTACCTCCGCTG 637 119 675 Antisense
CTCCGCTGTTAAGATCTCACCAAAA 645 233 692 Antisense
Sequence Source Affymetrix Proprietary Database