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[181411_at] 7TM chemoreceptor, srw family

Description F18E3.2 /REP_DB=WormBase Gene ID /WP=CE09464 /TR=Q19558 /GB=AAK18931.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 02      6grp_total_sub > Hat      6grp_cgc > 64      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 123
1 2 3 4 range
A 6.3
(-2.6)
A 		6.4
(-2.6)
A 		1.5
(-3)
A 		72.4
(3)
A 		71
B 7.1
(-2.7)
A 		2.8
(-3)
A 		7.8
(-2.7)
A 		92.3
(3)
A 		90
C 2.2
(-3)
A 		3.9
(-2.9)
A 		2.8
(-3)
A 		124.8
(3)
A 		123
avr 5.2
(-2.9) 		4.4
(-3) 		4
(-3) 		96.5
(3) 		93

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 7.3
(-1.9)
A 		1.4
(-3)
A 		27.2
(1.6)
A 		5
(-2.4)
A 		34.7
(3)
A 		13.2
(-0.9)
A 		33
B 4.3
(-0.6)
A 		6.9
(3)
A 		5.1
(0.5)
A 		2.6
(-3)
A 		6.4
(2.3)
A 		6.3
(2.2)
A 		4
C 1.5
(-3)
A 		51.3
(3)
A 		3.5
(-2.8)
A 		10.9
(-1.9)
A 		8.7
(-2.1)
A 		12.1
(-1.7)
A 		50
avr 4.4
(-3) 		19.9
(3) 		11.9
(-0.1) 		6.2
(-2.3) 		16.6
(1.7) 		10.5
(-0.6) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 2.3
(-1.9)
A 		1.4
(-2.4)
A 		0.4
(-3)
A 		10.6
(3)
A 		10
B 2.3
(-2.5)
A 		0.7
(-3)
A 		1.8
(-2.7)
A 		19.7
(3)
A 		19
C 0.7
(-3)
A 		1.1
(-2.9)
A 		1
(-2.9)
A 		21
(3)
A 		20
avr 1.8
(-2.7) 		1.1
(-3) 		1.1
(-3) 		17.1
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 1.3
(-2.5)
A 		0.5
(-3)
A 		5.9
(0.2)
A 		1.3
(-2.5)
A 		10.5
(3)
A 		3.2
(-1.4)
A 		10
B 1.5
(-0.5)
A 		2.3
(2.1)
A 		1.2
(-1.4)
A 		0.7
(-3)
A 		2.6
(3)
A 		2.3
(2.1)
A 		2
C 0.6
(-3)
A 		15.7
(3)
A 		0.9
(-2.9)
A 		2.2
(-2.4)
A 		2.8
(-2.1)
A 		4.1
(-1.6)
A 		15
avr 1.1
(-3) 		6.2
(3) 		2.7
(-1.1) 		1.4
(-2.6) 		5.3
(1.9) 		3.2
(-0.5) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181411_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12184
Sequence Type Exemplar sequence
Representative Public ID F18E3.2 NCBI
Target Description F18E3.2 /REP_DB=WormBase Gene ID /WP=CE09464 /TR=Q19558 /GB=AAK18931.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072499(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072499 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-67) (srw-67) mRNA, complete cds. 11/11 None
GENEFINDER00000036725 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7420252:7422555:1 11/11 None
F18E3.2 ENSEMBL cdna:known chromosome:CEL140:V:7420252:7422420:1 gene:F18E3.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7420252-7421327(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
Gene Symbol srw-67
Ensembl F18E3.2
Entrez Gene 184639 Entrez gene
SwissProt Q19558 EMBL-EBI
WormBase CE33922 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504900 Serpentine Receptor, class W family member (srw-67) [Caenorhabditis elegans] gb|AAK18931.2| Serpentine receptor, class w protein 67 [Caenorhabditis elegans] 0.0
blast NP_504900 Serpentine Receptor, class W family member (srw-67) [Caenorhabditis elegans] gb|AAK18931.2| Serpentine receptor, class w protein 67 [Caenorhabditis elegans] 1.0E-172
blast CAE71070 Hypothetical protein CBG17914 [Caenorhabditis briggsae] 2.0E-86
blast CAE70403 Hypothetical protein CBG16973 [Caenorhabditis briggsae] 3.0E-79
blast CAE71070 Hypothetical protein CBG17914 [Caenorhabditis briggsae] 4.0E-70
blast CAE70403 Hypothetical protein CBG16973 [Caenorhabditis briggsae] 1.0E-59
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504900.2 5 35-57,69-91,157-179,281-303,318-340
F18E3.2 5 35-57,69-91,157-179,281-303,318-340
GENEFINDER00000036725 3 35-57,69-91,157-179
Sequence
Target Sequence 
>C. ELEGANS:181411_AT
tgggtactggtatttgcgacatgttttgcttgtgcttatttatacatgcgtacacactga
cactcatttttccagatgatagatgctggaattaccacagttacattaacgtttttatcg
aagtatgggtgtcatcattaaacgatgtgctacgacgagcatctgcctggcttagcgtga
tgatggcattaactcgatttttgatcatgaaaaattcactgaatcctaaataccagtttc
tgtcaaaacctaaatttgcattaatatctatgtttttggcattttgggtgtctctacttg
tgtccgtattttatttaattcgcgttacaattacggaagttgaaccatggaccccagcag
attattgcgccgactatctggcaactt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGGTACTGGTATTTGCGACATGTT 488 553 227 Antisense
GCGACATGTTTTGCTTGTGCTTATT 419 289 242 Antisense
ATACATGCGTACACACTGACACTCA 139 25 268 Antisense
ACACTGACACTCATTTTTCCAGATG 308 111 280 Antisense
GATGTGCTACGACGAGCATCTGCCT 349 409 370 Antisense
GCATCTGCCTGGCTTAGCGTGATGA 687 309 385 Antisense
GAATCCTAAATACCAGTTTCTGTCA 189 331 447 Antisense
TTTGGCATTTTGGGTGTCTCTACTT 241 667 501 Antisense
GTCTCTACTTGTGTCCGTATTTTAT 600 467 516 Antisense
TGGACCCCAGCAGATTATTGCGCCG 158 549 574 Antisense
TATTGCGCCGACTATCTGGCAACTT 495 665 589 Antisense
Sequence Source Affymetrix Proprietary Database