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[181410_s_at]

Description F26G1.5 /REP_DB=WormBase Gene ID /WP=CE02697 /TR=Q19830 /GB=AAK31502.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 19      6grp_high1_10_10 > 91      6grp_highest_nonorm > 54      6grp_total > 92      4grp_total > 56      6grp_highest_sub > 05      6grp_high1_sub > 05      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2564
1 2 3 4 range
A 199.2
(-2.8)
P 		1904.7
(1.2)
P 		2663
(3)
P 		120.6
(-3)
A 		2542
B 165.3
(-2.8)
P 		1751.2
(1.2)
P 		2471.2
(3)
P 		98.8
(-3)
A 		2372
C 193
(-2.8)
P 		1551.5
(1)
P 		2268.1
(3)
P 		114.1
(-3)
A 		2154
avr 185.8
(-2.8) 		1735.8
(1.1) 		2467.4
(3) 		111.2
(-3) 		2356

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1406
1 2 3 4 5 6 range
A 796.4
(-3)
P 		1201.1
(-1.2)
P 		1040.1
(-1.9)
P 		1621.6
(0.7)
P 		2145.1
(3)
P 		981.5
(-2.2)
P 		1349
B 807.7
(-3)
P 		1133
(-1.6)
P 		1126.4
(-1.6)
P 		1707.6
(0.9)
P 		2178.5
(3)
P 		907.5
(-2.6)
P 		1371
C 772.5
(-3)
P 		1172.3
(-0.6)
P 		988.7
(-1.7)
P 		1704.5
(2.7)
P 		1761.8
(3)
P 		939.7
(-2)
P 		989
avr 792.2
(-3) 		1168.8
(-1.2) 		1051.7
(-1.7) 		1677.9
(1.3) 		2028.5
(3) 		942.9
(-2.3) 		1236
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 773
1 2 3 4 range
A 72.5
(-2.5)
P 		413.5
(0.5)
P 		696.1
(3)
P 		17.6
(-3)
A 		679
B 52.7
(-2.7)
P 		432.5
(1.5)
P 		572.6
(3)
P 		21.1
(-3)
A 		552
C 63.9
(-2.7)
P 		446.1
(0.3)
P 		790.5
(3)
P 		19.2
(-3)
A 		771
avr 63
(-2.6) 		430.7
(0.7) 		686.4
(3) 		19.3
(-3) 		667

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 738
1 2 3 4 5 6 range
A 146.8
(-3)
P 		427.2
(0.4)
P 		226.5
(-2)
P 		411.3
(0.2)
P 		647.3
(3)
P 		239
(-1.9)
P 		501
B 281.1
(-2.9)
P 		377.1
(-2)
P 		273.5
(-3)
P 		452.3
(-1.2)
P 		885.1
(3)
P 		338.4
(-2.4)
P 		612
C 286.3
(-2.3)
P 		357.7
(-1)
P 		251.6
(-3)
P 		342.8
(-1.3)
P 		570.1
(3)
P 		314.6
(-1.8)
P 		319
avr 238.1
(-3) 		387.3
(-1.1) 		250.5
(-2.8) 		402.1
(-0.9) 		700.8
(3) 		297.3
(-2.2) 		463
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181410_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4722
Sequence Type Exemplar sequence
Representative Public ID F26G1.5 NCBI
Target Description F26G1.5 /REP_DB=WormBase Gene ID /WP=CE02697 /TR=Q19830 /GB=AAK31502.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062455(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062455 NCBI Caenorhabditis elegans F26G1.5 (F26G1.5) mRNA, complete cds. 11/11 None
SNAP00000000803 ENSEMBL cdna:SNAP chromosome:CEL140:II:4770666:4771369:-1 11/11 None
GENEFINDER00000000823 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4770666:4771369:-1 11/11 None
F26G1.5 ENSEMBL cdna:known chromosome:CEL140:II:4770593:4771369:-1 gene:F26G1.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4770664-4771368(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F26G1.5
Entrez Gene 173823 Entrez gene
SwissProt Q19830 EMBL-EBI
WormBase CE02697 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK31502 Hypothetical protein F26G1.5 [Caenorhabditis elegans] ref|NP_494856.1| F26G1.5 [Caenorhabditis elegans] 1.0E-97
blast CAE73208 Hypothetical protein CBG20612 [Caenorhabditis briggsae] 5.0E-83
blast AAK68336 Hypothetical protein F18C5.9 [Caenorhabditis elegans] ref|NP_495327.1| F18C5.9 [Caenorhabditis elegans] 5.0E-33
Protein Domains
Database ID Description E-Value
Pfam IPR002602 EMBL-EBI Protein of unknown function DB 9.4E-44
Sequence
Target Sequence 
>C. ELEGANS:181410_S_AT
gaactacctaatccttggcagtctcctaatcgtatgtgtttctggtcaaggttggcaatg
gaatccattcaaccaatggcaacaaccagctgcaccagcatggccacaacatcaatgggg
agctccagctggatttggagcacagccacagacacaggctgtcgctggaccagctcaaca
cggagtcacaaatgccgttcaggatcgtatccaattaatctatggagttcctggaagacg
taatgccaatcaaaaattgagagtgtgctgtagatctttgaaggacgccgatgtggattg
tagaagaaaatattgcgattttgatgctttcagaccagaccaggttcttggcttcctcgg
tgaatgctctccaaagggtccaacagtcggtcaaatgtgggattgtgcatcttctcgtgc
tgaccatactgcttgctgccagcgtcaaggcgttattccaggatgtatggcttactgtga
aactaccaaaggagtacctactgattacttgaaatatgctctctgcattggacaatttga
tagaatccgatactgcttccgtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACTACCTAATCCTTGGCAGTCTC 651 349 15 Antisense
GGCAGTCTCCTAATCGTATGTGTTT 172 537 31 Antisense
GGATTTGGAGCACAGCCACAGACAC 143 511 145 Antisense
CACAGACACAGGCTGTCGCTGGACC 668 189 161 Antisense
TGGACCAGCTCAACACGGAGTCACA 108 549 180 Antisense
GGAGTCACAAATGCCGTTCAGGATC 526 517 196 Antisense
AGACCAGACCAGGTTCTTGGCTTCC 77 71 346 Antisense
GTGAATGCTCTCCAAAGGGTCCAAC 498 481 374 Antisense
TGTGGGATTGTGCATCTTCTCGTGC 260 555 410 Antisense
GCTGCCAGCGTCAAGGCGTTATTCC 498 297 449 Antisense
GATAGAATCCGATACTGCTTCCGTG 466 423 553 Antisense
Sequence Source Affymetrix Proprietary Database