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[181407_at]

Description T06E4.11 /REP_DB=WormBase Gene ID /WP=CE06377 /TR=Q22265 /GB=CAA94797.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 85      6grp_total > 86      4grp_total > 56      6grp_cgc > 58      6grp_cgc_sub > In      6grp_total_sub > Increase      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 592
1 2 3 4 range
A 14.1
(-3)
A 		445.4
(1.4)
P 		598.2
(3)
P 		15
(-3)
A 		584
B 5.8
(-3)
A 		412.2
(2.1)
P 		487.9
(3)
P 		15.8
(-2.9)
A 		482
C 24.6
(-2.9)
A 		409.8
(1.3)
P 		569.4
(3)
P 		18.9
(-3)
A 		551
avr 14.8
(-3) 		422.5
(1.6) 		551.8
(3) 		16.6
(-3) 		537

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 313
1 2 3 4 5 6 range
A 68.6
(-3)
A 		247.3
(0.4)
P 		153.7
(-1.4)
P 		238.6
(0.3)
P 		188
(-0.7)
P 		381.7
(3)
P 		313
B 91.4
(-3)
P 		199.8
(-0.2)
P 		148.7
(-1.5)
P 		155.2
(-1.3)
P 		251.8
(1.2)
P 		320
(3)
P 		229
C 72.4
(-3)
A 		181.6
(0.1)
P 		238.5
(1.7)
P 		189.6
(0.3)
P 		248.7
(2)
P 		283.8
(3)
P 		211
avr 77.5
(-3) 		209.6
(0.2) 		180.3
(-0.5) 		194.5
(-0.2) 		229.5
(0.6) 		328.5
(3) 		251
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 197
1 2 3 4 range
A 5.1
(-2.9)
A 		96.7
(0.7)
P 		156.4
(3)
P 		2.2
(-3)
A 		154
B 1.8
(-3)
A 		101.8
(2.4)
P 		113.1
(3)
P 		3.4
(-2.9)
A 		111
C 8.2
(-2.8)
A 		117.8
(0.5)
P 		198.4
(3)
P 		3.2
(-3)
A 		195
avr 5
(-2.9) 		105.4
(1) 		156
(3) 		2.9
(-3) 		153

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 107
1 2 3 4 5 6 range
A 12.7
(-3)
A 		87.9
(2.6)
P 		33.5
(-1.4)
P 		60.5
(0.6)
P 		56.7
(0.3)
P 		92.9
(3)
P 		80
B 31.8
(-3)
P 		66.5
(-0.6)
P 		36.1
(-2.7)
P 		41.1
(-2.4)
P 		102.3
(1.8)
P 		119.3
(3)
P 		88
C 26.8
(-3)
A 		55.4
(-0.5)
P 		60.7
(-0)
P 		38.1
(-2)
P 		80.5
(1.7)
P 		95
(3)
P 		68
avr 23.8
(-3) 		69.9
(0.5) 		43.4
(-1.5) 		46.6
(-1.3) 		79.8
(1.3) 		102.4
(3) 		79
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181407_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12175
Sequence Type Exemplar sequence
Representative Public ID T06E4.11 NCBI
Target Description T06E4.11 /REP_DB=WormBase Gene ID /WP=CE06377 /TR=Q22265 /GB=CAA94797.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073078(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073078 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-63) (pqn-63) mRNA, complete cds. 11/11 None
SNAP00000007434 ENSEMBL cdna:SNAP chromosome:CEL140:V:9618640:9620123:1 11/11 None
GENEFINDER00000007450 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9618457:9620123:1 11/11 None
T06E4.11 ENSEMBL cdna:known chromosome:CEL140:V:9619296:9620123:1 gene:T06E4.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9619295-9620123(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol pqn-63
Ensembl T06E4.11
Entrez Gene 188181 Entrez gene
SwissProt Q22265 EMBL-EBI
WormBase CE06377 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94797 Hypothetical protein T06E4.11 [Caenorhabditis elegans] ref|NP_505479.1| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-63) [Caenorhabditis elegans] 3.0E-41
blast CAA94797 Hypothetical protein T06E4.11 [Caenorhabditis elegans] ref|NP_505479.1| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-63) [Caenorhabditis elegans] 7.0E-41
blast CAE72208 Hypothetical protein CBG19319 [Caenorhabditis briggsae] 1.0E-34
blast CAE72208 Hypothetical protein CBG19319 [Caenorhabditis briggsae] 2.0E-34
Sequence
Target Sequence 
>C. ELEGANS:181407_AT
acaagatcctacccaatatgctcagcctccgcaacaacaacaaccatatccatatccatc
acagcaacaacttcaatcacaggcttcccaaggatatcctcaaaattatccacagcaaca
acccatgccatcccaatattccccacagcaggctcaacaacagttgccaccaagccagta
ccctgagcaaggccccggcccaattcaacagcaattcccacaacaatatcctcaaggacc
tgcacaacaacaagctcctggcccacaacaatatccacaggggcttcaaggatctccgca
aggatcacaacagcagcaaatgccacctcaaccacagcaacaaatgccttcatacaatca
gccagaagccctgcgacaggagattgaccaaattcaggaaggtccaatgcctacacgtgg
aaaccgtttgcagtttggagatgaagctcaggcagttttctccaaggccgtatacacttc
ttctggcgttcctgcaccaagagctgggaaatatcttcaaccaccaagagcaccaaacgc
tgagccagctggagccaaggca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAAGATCCTACCCAATATGCTCAG 588 113 225 Antisense
ATATCCATATCCATCACAGCAACAA 353 21 270 Antisense
GCAACAACTTCAATCACAGGCTTCC 381 319 288 Antisense
ACAGGCTTCCCAAGGATATCCTCAA 657 107 303 Antisense
CCAAGCCAGTACCCTGAGCAAGGCC 386 275 394 Antisense
TCCACAGGGGCTTCAAGGATCTCCG 256 589 498 Antisense
TACAATCAGCCAGAAGCCCTGCGAC 647 641 577 Antisense
CAGGAAGGTCCAATGCCTACACGTG 286 209 619 Antisense
AGCTCAGGCAGTTTTCTCCAAGGCC 510 79 669 Antisense
GCCGTATACACTTCTTCTGGCGTTC 335 283 691 Antisense
CGCTGAGCCAGCTGGAGCCAAGGCA 92 255 762 Antisense
Sequence Source Affymetrix Proprietary Database