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[181406_at]

Description C26E6.2 /REP_DB=WormBase Gene ID /WP=CE01160 /TR=Q18225 /GB=AAA21156.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 28      4grp_total > 30      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 367
1 2 3 4 range
A 441.3
(3)
P 		186.9
(-1.2)
A 		77.6
(-3)
A 		384.5
(2.1)
A 		364
B 423.6
(3)
P 		188
(-2)
A 		138.9
(-3)
A 		314
(0.7)
P 		285
C 425.3
(3)
P 		203.7
(-0.8)
A 		74.3
(-3)
A 		384.3
(2.3)
P 		351
avr 430.1
(3) 		192.9
(-1.3) 		96.9
(-3) 		360.9
(1.8) 		333

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 436
1 2 3 4 5 6 range
A 536.5
(3)
P 		283.7
(-0.7)
A 		129.2
(-3)
M 		184.5
(-2.2)
A 		265.9
(-1)
A 		181.9
(-2.2)
A 		407
B 384
(3)
P 		340.9
(2.1)
P 		100.4
(-3)
A 		153.5
(-1.9)
P 		299.5
(1.2)
P 		230.3
(-0.3)
P 		284
C 429.5
(3)
P 		346.1
(0.9)
P 		190.4
(-3)
A 		205.1
(-2.6)
A 		207.7
(-2.6)
M 		253
(-1.4)
P 		239
avr 450
(3) 		323.6
(0.6) 		140
(-3) 		181
(-2.2) 		257.7
(-0.7) 		221.7
(-1.4) 		310
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 140
1 2 3 4 range
A 160.7
(3)
P 		40.6
(-2.1)
A 		20.3
(-3)
A 		56.3
(-1.5)
A 		140
B 135.1
(3)
P 		46.4
(-2.2)
A 		32.2
(-3)
A 		66.9
(-1)
P 		103
C 140.8
(3)
P 		58.6
(-1.3)
A 		25.9
(-3)
A 		64.8
(-1)
P 		115
avr 145.5
(3) 		48.5
(-1.9) 		26.1
(-3) 		62.7
(-1.2) 		119

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 135
1 2 3 4 5 6 range
A 98.9
(2.8)
P 		100.9
(3)
A 		28.1
(-3)
M 		46.8
(-1.5)
A 		80.2
(1.3)
A 		44.3
(-1.7)
A 		73
B 133.6
(3)
P 		113.5
(1.9)
P 		24.4
(-3)
A 		40.7
(-2.1)
P 		121.7
(2.3)
P 		85.9
(0.4)
P 		109
C 159.2
(3)
P 		105.6
(0.3)
P 		48.4
(-2.6)
A 		41.2
(-3)
A 		67.2
(-1.7)
M 		84.7
(-0.8)
P 		118
avr 130.6
(3) 		106.7
(1.5) 		33.6
(-3) 		42.9
(-2.4) 		89.7
(0.5) 		71.6
(-0.6) 		97
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181406_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6298
Sequence Type Exemplar sequence
Representative Public ID C26E6.2 NCBI
Target Description C26E6.2 /REP_DB=WormBase Gene ID /WP=CE01160 /TR=Q18225 /GB=AAA21156.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065648(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065648 NCBI Caenorhabditis elegans C26E6.2 (C26E6.2) mRNA, complete cds. 11/11 None
SNAP00000014705 ENSEMBL cdna:SNAP chromosome:CEL140:III:4952092:4954590:1 11/11 None
GENEFINDER00000014710 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4952092:4954590:1 11/11 None
C26E6.2 ENSEMBL cdna:known chromosome:CEL140:III:4952083:4955073:1 gene:C26E6.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4948664-4954590(+) 97.8 100.0
Public Domain and Genome References
Gene Title
Ensembl C26E6.2
Entrez Gene 175670 Entrez gene
SwissProt Q18225 EMBL-EBI
WormBase CE32143 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA21156 Hypothetical protein C26E6.2 [Caenorhabditis elegans] ref|NP_498049.2| C26E6.2 [Caenorhabditis elegans] 0.0
blast CAE71310 Hypothetical protein CBG18201 [Caenorhabditis briggsae] 1.0E-137
blast CAA21587 Hypothetical protein Y11D7A.12 [Caenorhabditis elegans] ref|NP_501618.2| Y11D7A.12 [Caenorhabditis elegans] 5.0E-28
Sequence
Target Sequence 
>C. ELEGANS:181406_AT
aataatttaatgcttctcgcctcaatcaatgcagcagcaactgcggctgcagctgcaact
tctgctggaataagtccgccggttgttggacagaaaagagtatcaacgactgtgatgcct
atcactttgaaatcgcaacgcacaactcctaaagaagaagaagattcatctcaattgatg
tcacaagaagaattccgtatcacttacgaattgaccaaaaagctcatggaaatgatgaag
ccaaaaactgaaattggagttcgatggcaaggagatgaagggtcaattcttttgttctta
tcacatgataatggagcagaagagaatgtcttctttccggtggttgtcatgaatcgtgat
gagaaatccctaatcactgcgttagaaggattcactggcaaacgttgcgaaggaaaactt
gctctgtgttactcacagagggttaatgtgcttgtacatgaagcgctaatcagcaattgg
acacacggaaaactatttctcgtcaacactgatgcacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATAATTTAATGCTTCTCGCCTCAA 493 171 1750 Antisense
GCAGCAGCAACTGCGGCTGCAGCTG 185 313 1780 Antisense
CTGCAGCTGCAACTTCTGCTGGAAT 388 233 1796 Antisense
GAATAAGTCCGCCGGTTGTTGGACA 554 317 1817 Antisense
GTATCAACGACTGTGATGCCTATCA 472 453 1849 Antisense
TGAAATCGCAACGCACAACTCCTAA 497 571 1877 Antisense
TCTTCTTTCCGGTGGTTGTCATGAA 524 615 2078 Antisense
AGAAATCCCTAATCACTGCGTTAGA 560 69 2111 Antisense
GAAGGATTCACTGGCAAACGTTGCG 51 335 2134 Antisense
GAAAACTTGCTCTGTGTTACTCACA 524 355 2162 Antisense
TATTTCTCGTCAACACTGATGCACC 89 663 2243 Antisense
Sequence Source Affymetrix Proprietary Database