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[181405_at]

Description ZC477.4 /REP_DB=WormBase Gene ID /WP=CE05060 /TR=Q23341 /GB=AAK19010.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 02      4grp_total > 48      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 39.4
(-2.1)
A 		62.6
(3)
A 		41.1
(-1.7)
A 		35.4
(-3)
A 		27
B 24.4
(-1.2)
A 		19
(-1.8)
A 		68.2
(3)
A 		6.2
(-3)
A 		62
C 34.2
(-3)
A 		48.1
(-0.3)
A 		40.1
(-1.8)
A 		64.8
(3)
A 		31
avr 32.7
(-3) 		43.2
(0.7) 		49.8
(3) 		35.5
(-2) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 31.3
(0.7)
A 		48.4
(3)
A 		18
(-1)
A 		26.4
(0.1)
A 		36.8
(1.5)
A 		3.1
(-3)
A 		45
B 58.5
(3)
A 		44.4
(1.3)
A 		37.7
(0.5)
A 		57.4
(2.9)
A 		34.1
(0.1)
A 		7.6
(-3)
A 		51
C 27.3
(-0.9)
A 		65.2
(3)
A 		38.4
(0.2)
A 		26.1
(-1)
A 		43.3
(0.7)
A 		7
(-3)
A 		58
avr 39
(1.2) 		52.7
(3) 		31.4
(0.3) 		36.6
(0.9) 		38.1
(1.1) 		5.9
(-3) 		47
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 14.3
(3)
A 		13.6
(2.5)
A 		10.8
(0.7)
A 		5.2
(-3)
A 		9
B 7.8
(-0.3)
A 		4.7
(-1.6)
A 		15.8
(3)
A 		1.3
(-3)
A 		15
C 11.3
(-2.2)
A 		13.8
(2.6)
A 		14
(3)
A 		10.9
(-3)
A 		3
avr 11.1
(1.1) 		10.7
(0.8) 		13.5
(3) 		5.8
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 5.8
(-1.2)
A 		17.2
(3)
A 		3.9
(-1.9)
A 		6.7
(-0.8)
A 		11.1
(0.8)
A 		0.8
(-3)
A 		16
B 20.3
(3)
A 		14.8
(1.1)
A 		9.2
(-0.8)
A 		15.2
(1.3)
A 		13.9
(0.8)
A 		2.8
(-3)
A 		18
C 10.1
(-0.4)
A 		19.9
(3)
A 		9.8
(-0.5)
A 		5.3
(-2)
A 		14
(1)
A 		2.4
(-3)
A 		18
avr 12.1
(1) 		17.3
(3) 		7.6
(-0.8) 		9.1
(-0.2) 		13
(1.3) 		2
(-3) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181405_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10038
Sequence Type Exemplar sequence
Representative Public ID ZC477.4 NCBI
Target Description ZC477.4 /REP_DB=WormBase Gene ID /WP=CE05060 /TR=Q23341 /GB=AAK19010.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068705(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068705 NCBI Caenorhabditis elegans ZC477.4 (ZC477.4) mRNA, complete cds. 11/11 None
ZC477.4 ENSEMBL cdna:known chromosome:CEL140:IV:7098526:7098768:-1 gene:ZC477.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7098531-7098774(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC477.4
Entrez Gene 191180 Entrez gene
SwissProt Q23341 EMBL-EBI
WormBase CE05060 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK19010 Hypothetical protein ZC477.4 [Caenorhabditis elegans] ref|NP_501106.1| ZC477.4 [Caenorhabditis elegans] 4.0E-23
Sequence
Target Sequence 
>C. ELEGANS:181405_AT
ctctaaagatcctcccgggagcttcatcatcatcttcttcctctactgcttcttcacaaa
tccgcccaccctctctcagtctctctgcttcactttcggaggagctcagagtggaagaat
gcggctctcctcgggtgggagcaaaggaaagctctttctattgcactgagcaaccagcac
agagcagctactc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCTAAAGATCCTCCCGGGAGCTTC 648 195 29 Antisense
TAAAGATCCTCCCGGGAGCTTCATC 689 639 32 Antisense
CTCTCTGCTTCACTTTCGGAGGAGC 374 231 109 Antisense
TCTGCTTCACTTTCGGAGGAGCTCA 351 609 112 Antisense
GCTTCACTTTCGGAGGAGCTCAGAG 427 305 115 Antisense
GGAGCTCAGAGTGGAAGAATGCGGC 244 521 129 Antisense
GGCTCTCCTCGGGTGGGAGCAAAGG 688 537 151 Antisense
GGAAAGCTCTTTCTATTGCACTGAG 655 527 174 Antisense
GCTCTTTCTATTGCACTGAGCAACC 279 301 179 Antisense
TGCACTGAGCAACCAGCACAGAGCA 552 577 190 Antisense
AGCAACCAGCACAGAGCAGCTACTC 162 75 197 Antisense
Sequence Source Affymetrix Proprietary Database