[Home] | [Total List]

[181404_at]

Description T01D1.1 /REP_DB=WormBase Gene ID /WP=CE12940 /TR=P91417 /GB=AAB37885.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 65      4grp_total > 19      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 7.9
(-1.7)
A 		4.6
(-3)
A 		6.3
(-2.3)
A 		19.7
(3)
A 		15
B 19.2
(2.1)
A 		4.1
(-3)
A 		5.2
(-2.6)
A 		21.9
(3)
A 		18
C 1.9
(-2.9)
A 		29.7
(3)
A 		1.3
(-3)
A 		23.2
(1.6)
A 		28
avr 9.7
(-1.1) 		12.8
(-0.1) 		4.3
(-3) 		21.6
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 3.4
(-2.8)
A 		3.1
(-2.8)
A 		2.5
(-2.9)
A 		1.5
(-3)
A 		1.3
(-3)
A 		59
(3)
A 		58
B 2.2
(-3)
A 		4.1
(-2.5)
A 		23.5
(3)
A 		2.6
(-2.9)
A 		4.6
(-2.3)
A 		8.3
(-1.3)
A 		21
C 2.5
(-3)
A 		4.1
(-2.6)
A 		26.7
(3)
A 		12.1
(-0.6)
A 		4
(-2.6)
A 		10.7
(-1)
A 		24
avr 2.7
(-3) 		3.8
(-2.7) 		17.6
(0.8) 		5.4
(-2.3) 		3.3
(-2.8) 		26
(3) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 2.9
(3)
A 		1
(-3)
A 		1.6
(-1.1)
A 		2.9
(3)
A 		2
B 6.1
(3)
A 		1
(-3)
A 		1.2
(-2.8)
A 		4.7
(1.4)
A 		5
C 0.6
(-2.9)
A 		8.5
(3)
A 		0.5
(-3)
A 		3.9
(-0.5)
A 		8
avr 3.2
(1.7) 		3.5
(2.3) 		1.1
(-3) 		3.8
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 0.6
(-2.9)
A 		1.1
(-2.7)
A 		0.5
(-3)
A 		0.4
(-3)
A 		0.4
(-3)
A 		14.4
(3)
A 		14
B 0.8
(-2.9)
A 		1.4
(-2.2)
A 		5.7
(3)
A 		0.7
(-3)
A 		1.9
(-1.6)
A 		3.1
(-0.1)
A 		5
C 0.9
(-3)
A 		1.3
(-2.6)
A 		6.8
(3)
A 		2.4
(-1.5)
A 		1.3
(-2.6)
A 		3.6
(-0.3)
A 		6
avr 0.8
(-3) 		1.3
(-2.5) 		4.3
(0.4) 		1.2
(-2.6) 		1.2
(-2.6) 		7
(3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181404_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4706
Sequence Type Exemplar sequence
Representative Public ID T01D1.1 NCBI
Target Description T01D1.1 /REP_DB=WormBase Gene ID /WP=CE12940 /TR=P91417 /GB=AAB37885.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061276(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061276 NCBI Caenorhabditis elegans T01D1.1 (T01D1.1) mRNA, complete cds. 11/11 None
T01D1.1 ENSEMBL cdna:known chromosome:CEL140:II:178517:179881:1 gene:T01D1.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:178516-179881(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T01D1.1
Entrez Gene 187949 Entrez gene
SwissProt P91417 EMBL-EBI
WormBase CE12940 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37885 Hypothetical protein T01D1.1 [Caenorhabditis elegans] ref|NP_493677.1| T01D1.1 [Caenorhabditis elegans] 8.0E-73
Sequence
Target Sequence 
>C. ELEGANS:181404_AT
tgaactttactcacatcaggcgaaaatttatcctctaatagtaaggatatataatttttt
ttttgaaaacaaccgtgaagtccaactttctgaacttcgaacaacttttttagaatatgc
cagtgaacacattgctagaaaaaccggaaaggagtcgggtgcaaaggagcgccaaaacca
gatggactacagagatcgcaaccctatattgcaacaaagaaaagtttggaaagcggcgac
taattattcaagtaagtttttttctgattggttgatgggacttatatcacaaatggcgat
ggtatatttctccagctctttaaagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAACTTTACTCACATCAGGCGAAA 395 573 51 Antisense
ACAACCGTGAAGTCCAACTTTCTGA 289 113 119 Antisense
TCTGAACTTCGAACAACTTTTTTAG 256 605 139 Antisense
GAATATGCCAGTGAACACATTGCTA 150 327 163 Antisense
GGAGTCGGGTGCAAAGGAGCGCCAA 79 517 201 Antisense
GGAGCGCCAAAACCAGATGGACTAC 485 519 216 Antisense
ATGGACTACAGAGATCGCAACCCTA 627 51 232 Antisense
GAGATCGCAACCCTATATTGCAACA 285 397 242 Antisense
GAAAGCGGCGACTAATTATTCAAGT 512 359 279 Antisense
ATGGGACTTATATCACAAATGGCGA 64 51 325 Antisense
GTATATTTCTCCAGCTCTTTAAAGT 678 453 352 Antisense
Sequence Source Affymetrix Proprietary Database