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[181402_at]

Description F52C6.5 /REP_DB=WormBase Gene ID /WP=CE10810 /TR=O44812 /GB=AAB94973.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 74      4grp_total > 42      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 1.5
(-3)
A 		3.4
(0.2)
A 		5.1
(3)
A 		4
(1.2)
A 		4
B 1.5
(-2.5)
A 		3.5
(3)
A 		1.4
(-2.7)
A 		1.3
(-3)
A 		2
C 1
(-3)
A 		3.9
(3)
A 		1
(-3)
A 		2.2
(-0.5)
A 		3
avr 1.3
(-3) 		3.6
(3) 		2.5
(0.1) 		2.5
(0.1) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 1.2
(-3)
A 		1.9
(-1.6)
A 		1.3
(-2.8)
A 		2.1
(-1.3)
A 		3.1
(0.7)
A 		4.3
(3)
A 		3
B 1.2
(-3)
A 		1.5
(-2.3)
A 		3.2
(1.4)
A 		3.9
(3)
A 		1.2
(-3)
A 		2.5
(-0.1)
A 		3
C 2.2
(1.7)
A 		2.3
(2.1)
A 		2.1
(1.4)
A 		2.5
(2.7)
A 		2.6
(3)
A 		0.7
(-3)
A 		2
avr 1.5
(-3) 		1.9
(-1.2) 		2.2
(0.2) 		2.8
(3) 		2.3
(0.7) 		2.5
(1.6) 		1
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1
1 2 3 4 range
A 0.5
(-3)
A 		0.7
(-1.5)
A 		1.3
(3)
A 		0.6
(-2.3)
A 		1
B 0.5
(-1)
A 		0.9
(3)
A 		0.3
(-3)
A 		0.3
(-3)
A 		1
C 0.3
(-3)
A 		1.1
(3)
A 		0.3
(-3)
A 		0.4
(-2.3)
A 		1
avr 0.4
(-3) 		0.9
(3) 		0.6
(-0.6) 		0.4
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1
1 2 3 4 5 6 range
A 0.2
(-3)
A 		0.7
(0.8)
A 		0.3
(-2.3)
A 		0.5
(-0.8)
A 		0.9
(2.3)
A 		1
(3)
A 		1
B 0.4
(-3)
A 		0.5
(-2)
A 		0.8
(1)
A 		1
(3)
A 		0.5
(-2)
A 		0.9
(2)
A 		1
C 0.8
(2.1)
A 		0.7
(1.3)
A 		0.5
(-0.4)
A 		0.5
(-0.4)
A 		0.9
(3)
A 		0.2
(-3)
A 		1
avr 0.5
(-3) 		0.6
(-1) 		0.5
(-3) 		0.7
(1) 		0.8
(3) 		0.7
(1) 		0
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181402_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4705
Sequence Type Exemplar sequence
Representative Public ID F52C6.5 NCBI
Target Description F52C6.5 /REP_DB=WormBase Gene ID /WP=CE10810 /TR=O44812 /GB=AAB94973.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061718(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061718 NCBI Caenorhabditis elegans F52C6.5 (F52C6.5) mRNA, complete cds. 11/11 None
SNAP00000005717 ENSEMBL cdna:SNAP chromosome:CEL140:II:1908552:1909737:1 11/11 None
GENEFINDER00000005737 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1908163:1909737:1 11/11 None
F52C6.5 ENSEMBL cdna:known chromosome:CEL140:II:1908163:1909737:1 gene:F52C6.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1908161-1909736(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F52C6.5
Entrez Gene 186087 Entrez gene
SwissProt O44812 EMBL-EBI
WormBase CE10810 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB94973 Hypothetical protein F52C6.5 [Caenorhabditis elegans] ref|NP_494119.1| F52C6.5 [Caenorhabditis elegans] 0.0
blast AAB94973 Hypothetical protein F52C6.5 [Caenorhabditis elegans] ref|NP_494119.1| F52C6.5 [Caenorhabditis elegans] 1.0E-176
blast AAB70956 Hypothetical protein C46F9.2 [Caenorhabditis elegans] ref|NP_494117.1| C46F9.2 [Caenorhabditis elegans] 1.0E-119
blast AAC26265 Hypothetical protein C40D2.2 [Caenorhabditis elegans] ref|NP_494146.1| C40D2.2 [Caenorhabditis elegans] 1.0E-119
Protein Domains
Database ID Description E-Value
Pfam IPR002083 EMBL-EBI MATH 3.6E-27
Pfam IPR002083 EMBL-EBI MATH 1.1E-37
Pfam IPR002083 EMBL-EBI MATH 4.9E-21
Pfam IPR002083 EMBL-EBI MATH 3.6E-27
Pfam IPR002083 EMBL-EBI MATH 1.1E-37
Sequence
Target Sequence 
>C. ELEGANS:181402_AT
tcggttcgctttggggaatcctgaagttcattagttggaacaatttggagaaggattatg
tgaccaatgacagtattgatgtggaagttcttgtcaaaataattgaattcacagaattgc
catgcacggagaaaacatttgtactatcccatattgtcaagaacatgtcaagtattgaag
acgggtggaaaaccttttcggacactcaaactcgcttcaacattccatggaaattgcaaa
ttagaagacaagatggatttgttgaactactccttcattgttcaaaacaactagatgaat
ccagaagctggtcaattaaaactgaatatcaattcaaactagtgtcaactaatggaagaa
gtgtcgcgttctatggcgaaaaggtgtttgaaaaaccagtgggtagtggatgggataaac
tcataagatgggaaaactgggcaagcagatgcaacgatgagtttgtgtttgaagcgagtg
tgaggattcttaacacgactggaattgaggacgagaatgatgttgataggttctctggat
ttgcgatcccagtggaaggtcaggagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGGTTCGCTTTGGGGAATCCTGAA 151 605 539 Antisense
GGAATCCTGAAGTTCATTAGTTGGA 629 531 553 Antisense
CAGTATTGATGTGGAAGTTCTTGTC 704 205 609 Antisense
TGAATTCACAGAATTGCCATGCACG 150 573 642 Antisense
GATGGATTTGTTGAACTACTCCTTC 549 405 790 Antisense
TGAACTACTCCTTCATTGTTCAAAA 291 573 801 Antisense
AGCAGATGCAACGATGAGTTTGTGT 205 77 982 Antisense
GAGTTTGTGTTTGAAGCGAGTGTGA 463 399 997 Antisense
GCGAGTGTGAGGATTCTTAACACGA 212 291 1012 Antisense
CTCTGGATTTGCGATCCCAGTGGAA 701 231 1071 Antisense
GCGATCCCAGTGGAAGGTCAGGAGT 133 291 1081 Antisense
Sequence Source Affymetrix Proprietary Database