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[181401_at]

Description C54E10.3 /REP_DB=WormBase Gene ID /WP=CE20612 /TR=Q9XVB5 /GB=CAB04000.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 21      4grp_highest_8_8 > 06      4grp_high_8_8 > 30      6grp_total > 32      4grp_total > 25      6grp_high1_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 54.9
(-2.8)
P 		54.1
(-3)
P 		59.1
(-1.9)
P 		80.9
(3)
P 		27
B 52.5
(-3)
P 		95.4
(3)
P 		65.6
(-1.2)
P 		88.1
(2)
P 		43
C 31.2
(-3)
P 		75.2
(0.3)
P 		65.6
(-0.4)
P 		110.7
(3)
P 		80
avr 46.2
(-3) 		74.9
(0.7) 		63.4
(-0.8) 		93.2
(3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 69.9
(2.1)
P 		54.9
(0.6)
P 		78.8
(3)
P 		67.7
(1.9)
A 		58.9
(1)
P 		19.8
(-3)
A 		59
B 77.7
(2.8)
P 		69
(1.7)
P 		79.2
(3)
P 		57.6
(0.3)
P 		45.8
(-1.2)
P 		31.3
(-3)
P 		48
C 41.7
(-1.6)
P 		61.2
(1.7)
P 		58
(1.2)
P 		68.6
(3)
P 		33.2
(-3)
P 		35
(-2.7)
M 		35
avr 63.1
(1.8) 		61.7
(1.6) 		72
(3) 		64.6
(2) 		46
(-0.6) 		28.7
(-3) 		43
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 20
(3)
P 		11.7
(-3)
P 		15.4
(-0.3)
P 		11.8
(-2.9)
P 		8
B 16.7
(-1.9)
P 		23.6
(3)
P 		15.2
(-3)
P 		18.8
(-0.4)
P 		8
C 10.3
(-3)
P 		21.6
(2.4)
P 		22.9
(3)
P 		18.7
(1)
P 		13
avr 15.7
(-3) 		19
(3) 		17.8
(0.8) 		16.4
(-1.7) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 12.9
(0.3)
P 		19.5
(3)
P 		17.2
(2.1)
P 		17.2
(2.1)
A 		17.8
(2.3)
P 		4.8
(-3)
A 		15
B 27
(3)
P 		23
(1.4)
P 		19.2
(-0.1)
P 		15.3
(-1.6)
P 		18.6
(-0.3)
P 		11.7
(-3)
P 		15
C 15.5
(0.6)
P 		18.7
(3)
P 		14.8
(0)
P 		13.8
(-0.7)
P 		10.8
(-3)
P 		11.7
(-2.3)
M 		8
avr 18.5
(2) 		20.4
(3) 		17.1
(1.2) 		15.4
(0.3) 		15.7
(0.4) 		9.4
(-3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181401_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12739
Sequence Type Exemplar sequence
Representative Public ID C54E10.3 NCBI
Target Description C54E10.3 /REP_DB=WormBase Gene ID /WP=CE20612 /TR=Q9XVB5 /GB=CAB04000.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075275(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075275 NCBI Caenorhabditis elegans C54E10.3 (C54E10.3) mRNA, complete cds. 11/11 None
GENEFINDER00000040263 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18813578:18817269:1 11/11 None
C54E10.3 ENSEMBL cdna:known chromosome:CEL140:V:18813578:18816054:1 gene:C54E10.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000040257 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18813577-18816054(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C54E10.3
Entrez Gene 183793 Entrez gene
SwissProt Q9XVB5 EMBL-EBI
WormBase CE20612 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04000 Hypothetical protein C54E10.3 [Caenorhabditis elegans] ref|NP_507676.1| C54E10.3 [Caenorhabditis elegans] 1.0E-166
blast CAB04000 Hypothetical protein C54E10.3 [Caenorhabditis elegans] ref|NP_507676.1| C54E10.3 [Caenorhabditis elegans] 1.0E-161
blast NP_503838 C50H11.13 [Caenorhabditis elegans] gb|AAG24000.2| Hypothetical protein C50H11.13 [Caenorhabditis elegans] 8.0E-88
blast NP_503838 C50H11.13 [Caenorhabditis elegans] gb|AAG24000.2| Hypothetical protein C50H11.13 [Caenorhabditis elegans] 2.0E-86
blast CAE70425 Hypothetical protein CBG16999 [Caenorhabditis briggsae] 5.0E-77
blast CAE70425 Hypothetical protein CBG16999 [Caenorhabditis briggsae] 8.0E-77
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507676.1 5 32-54,66-88,119-138,150-172,194-216
C54E10.3 5 32-54,66-88,119-138,150-172,194-216
GENEFINDER00000040263 5 32-54,66-88,119-138,150-172,194-216
Sequence
Target Sequence 
>C. ELEGANS:181401_AT
tcatcgtcatgctttattcactggacttgggtggcaatgtatgcagatcgtttttgctac
attttctttccgttccgcttccgtcgacactcgaaattccgcaccaaatgcattttgtgc
acgattttgctgatttccatgtgcttccagttatggaccccaattcttatcaccgggaga
cggctggatagtcaatttgataatatttattgtgcggaggatccgaggtttcaaaaacat
tttcaactaatcatggtgctagaagtgatcaccactttctttttaccactaactctcaca
atttttgcggacatctccgttttgacgtggaaaaccaaaatcacaatggtaactcaaaat
gagatatcgtcaaagacaagtgacatgggttcccggaagcatagtcacatcaaaattgtc
tcggaaaactgcttaaggaacagtctaaaacggcgatcccatgacatcag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCATCGTCATGCTTTATTCACTGGA 590 621 352 Antisense
GATCGTTTTTGCTACATTTTCTTTC 103 419 397 Antisense
TCCGTCGACACTCGAAATTCCGCAC 276 595 431 Antisense
ATTTTGCTGATTTCCATGTGCTTCC 111 15 475 Antisense
ATGTGCTTCCAGTTATGGACCCCAA 606 49 490 Antisense
GACCCCAATTCTTATCACCGGGAGA 206 377 507 Antisense
GTGATCACCACTTTCTTTTTACCAC 371 483 616 Antisense
TTTACCACTAACTCTCACAATTTTT 552 673 633 Antisense
CGGACATCTCCGTTTTGACGTGGAA 375 241 659 Antisense
GTTCCCGGAAGCATAGTCACATCAA 89 443 740 Antisense
TAAAACGGCGATCCCATGACATCAG 686 639 797 Antisense
Sequence Source Affymetrix Proprietary Database