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[181400_at] 7TM chemoreceptor, srt family

Description C18H7.8 /REP_DB=WormBase Gene ID /WP=CE17433 /TR=Q9GZF9 /GB=AAF98613.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 18      4grp_total > 20      6grp_cgc > 01      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 27.3
(1.5)
A 		28.9
(1.8)
A 		3.4
(-3)
A 		35
(3)
A 		32
B 27.7
(2.9)
A 		16.3
(-0)
A 		4.6
(-3)
A 		28.2
(3)
A 		24
C 29.9
(-1.2)
A 		17.6
(-2.3)
A 		10.5
(-3)
A 		74.6
(3)
P 		64
avr 28.3
(0.3) 		20.9
(-0.8) 		6.2
(-3) 		45.9
(3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 44.7
(2.4)
A 		11.9
(-1.9)
A 		36.1
(1.3)
A 		3.3
(-3)
A 		49.3
(3)
A 		4.3
(-2.9)
A 		46
B 29.5
(3)
A 		26.5
(2.3)
A 		7.7
(-1.9)
A 		14.3
(-0.4)
A 		3
(-3)
A 		8.5
(-1.8)
A 		27
C 26.3
(3)
A 		4.1
(-2.5)
A 		22.9
(2.2)
A 		2
(-3)
A 		16.3
(0.5)
A 		20.7
(1.6)
A 		24
avr 33.5
(3) 		14.2
(-1.3) 		22.2
(0.5) 		6.5
(-3) 		22.9
(0.6) 		11.2
(-2) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 9.9
(3)
A 		6.3
(0.6)
A 		0.9
(-3)
A 		5.1
(-0.2)
A 		9
B 8.8
(3)
A 		4
(-0.7)
A 		1.1
(-3)
A 		6
(0.8)
A 		8
C 9.9
(1.2)
A 		5.1
(-2)
A 		3.6
(-3)
A 		12.6
(3)
P 		9
avr 9.5
(3) 		5.1
(-0.5) 		1.9
(-3) 		7.9
(1.7) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 8.2
(0.1)
A 		4.2
(-1.6)
A 		7.9
(0)
A 		0.8
(-3)
A 		14.9
(3)
A 		1
(-2.9)
A 		14
B 10.3
(3)
A 		8.8
(2)
A 		1.9
(-2.5)
A 		3.8
(-1.3)
A 		1.2
(-3)
A 		3.2
(-1.7)
A 		9
C 9.7
(3)
A 		1.3
(-2.4)
A 		5.8
(0.5)
A 		0.4
(-3)
A 		5.3
(0.2)
A 		6.9
(1.2)
A 		9
avr 9.4
(3) 		4.8
(-0.6) 		5.2
(-0.3) 		1.7
(-3) 		7.1
(1.2) 		3.7
(-1.4) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181400_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11099
Sequence Type Exemplar sequence
Representative Public ID C18H7.8 NCBI
Target Description C18H7.8 /REP_DB=WormBase Gene ID /WP=CE17433 /TR=Q9GZF9 /GB=AAF98613.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067554(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067554 NCBI Caenorhabditis elegans Serpentine Receptor, class T family member (srt-59) (srt-59) mRNA, complete cds. 11/11 None
C18H7.8 ENSEMBL cdna:known chromosome:CEL140:IV:599557:602676:-1 gene:C18H7.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000042865 8/11 Cross Hyb Matching Probes None
GENEFINDER00000042871 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:599562-602682(-) 93.55 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srt family
Gene Symbol srt-59
Ensembl C18H7.8
Entrez Gene 182805 Entrez gene
SwissProt Q9GZF9 EMBL-EBI
WormBase CE17433 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF98613 Serpentine receptor, class t protein 59 [Caenorhabditis elegans] ref|NP_499955.1| Serpentine Receptor, class T family member (srt-59) [Caenorhabditis elegans] 0.0
blast CAE73752 Hypothetical protein CBG21286 [Caenorhabditis briggsae] 3.0E-82
blast AAY86308 Hypothetical protein Y55F3C.10 [Caenorhabditis elegans] 2.0E-64
Protein Domains
Database ID Description E-Value
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 6.7E-52
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 7.0E-14
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499955.1 5 183-202,209-231,246-268,289-311,326-348
C18H7.8 5 183-202,209-231,246-268,289-311,326-348
Sequence
Target Sequence 
>C. ELEGANS:181400_AT
aactttctgctcttacccaagatttatctacgtagctggagcaattggatgtgggtgttg
gatgggatcgtgctcaacttgcattctgttagcagccaatcgatgtagtgatattaatca
taatcttccaatccggaaaatgttcatcgggaagaatgtctacataactatgatgattcc
agcgacgtatacaatttatgcaatgtttttcacaaaaccaataatttttgactcaaatta
tatgagctggtttttcaatccgaatttgggactaaacgtattcatgcaatcaattattat
ttgtacgtgtaaagcaacagctgcatttatctacgtttacatgcaattttttaattctcc
acctcccgtcatcctgtttggcgagatcgcgtggcagtgtgcacatgtcaaacaagtggc
tccaaatcaaactttttacagcatccgtttgcgtggtgtaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTTTCTGCTCTTACCCAAGATTT 236 139 720 Antisense
GTGGGTGTTGGATGGGATCGTGCTC 699 487 770 Antisense
GATCGTGCTCAACTTGCATTCTGTT 100 419 785 Antisense
GCATTCTGTTAGCAGCCAATCGATG 55 309 800 Antisense
AACTATGATGATTCCAGCGACGTAT 301 137 885 Antisense
ACAGCTGCATTTATCTACGTTTACA 466 109 1036 Antisense
TGCAATTTTTTAATTCTCCACCTCC 207 577 1061 Antisense
TCATCCTGTTTGGCGAGATCGCGTG 146 623 1088 Antisense
ATCGCGTGGCAGTGTGCACATGTCA 637 37 1105 Antisense
GTGGCTCCAAATCAAACTTTTTACA 554 481 1135 Antisense
ACAGCATCCGTTTGCGTGGTGTACA 139 109 1157 Antisense
Sequence Source Affymetrix Proprietary Database