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[181399_at]

Description ZK682.5 /REP_DB=WormBase Gene ID /WP=CE05103 /TR=Q23580 /GB=AAA82419.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 44      6grp_high1_10_10 > 34      6grp_highest_nonorm > 74      6grp_total > 0      4grp_total > 49      6grp_total_sub > Hat      6grp_highest_sub > 02      6grp_high1_sub > 02      6grp_rule_based > S2      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1623
1 2 3 4 range
A 67.1
(-3)
A 		1688.9
(3)
P 		1390
(1.9)
P 		134.9
(-2.7)
M 		1622
B 104
(-3)
A 		1333.4
(2.1)
P 		1549.8
(3)
P 		103.8
(-3)
A 		1446
C 66.2
(-3)
A 		1546.6
(3)
P 		1423.2
(2.5)
P 		111.9
(-2.8)
M 		1480
avr 79.1
(-3) 		1523
(3) 		1454.3
(2.7) 		116.9
(-2.8) 		1444

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 595
1 2 3 4 5 6 range
A 496.6
(-2.7)
P 		1059.6
(3)
P 		464.8
(-3)
P 		635.9
(-1.3)
P 		632.4
(-1.3)
P 		697.6
(-0.7)
P 		595
B 547.3
(-2.4)
P 		904.4
(3)
P 		530.1
(-2.6)
P 		505.5
(-3)
P 		556.1
(-2.2)
P 		562.7
(-2.1)
P 		399
C 557.9
(-2.2)
P 		900.3
(3)
P 		726.4
(0.3)
P 		594.8
(-1.7)
P 		594.9
(-1.7)
P 		507.9
(-3)
P 		392
avr 533.9
(-3) 		954.8
(3) 		573.8
(-2.4) 		578.7
(-2.4) 		594.5
(-2.1) 		589.4
(-2.2) 		421
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 477
1 2 3 4 range
A 24.4
(-2.9)
A 		366.6
(3)
P 		363.4
(2.9)
P 		19.7
(-3)
M 		347
B 33.2
(-2.8)
A 		329.3
(2.5)
P 		359.1
(3)
P 		22.1
(-3)
A 		337
C 21.9
(-3)
A 		444.6
(2.4)
P 		496
(3)
P 		18.9
(-3)
M 		477
avr 26.5
(-2.9) 		380.2
(2.6) 		406.2
(3) 		20.2
(-3) 		386

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 285
1 2 3 4 5 6 range
A 91.6
(-3)
P 		376.9
(3)
P 		101.2
(-2.8)
P 		161.3
(-1.5)
P 		190.8
(-0.9)
P 		169.8
(-1.4)
P 		285
B 190.4
(-0.9)
P 		301
(3)
P 		128.7
(-3)
P 		133.9
(-2.8)
P 		225.9
(0.4)
P 		209.8
(-0.2)
P 		172
C 206.8
(0.4)
P 		274.7
(3)
P 		184.9
(-0.5)
P 		119.6
(-3)
P 		192.5
(-0.2)
P 		170
(-1.1)
P 		155
avr 162.9
(-2.2) 		317.5
(3) 		138.3
(-3) 		138.3
(-3) 		203.1
(-0.8) 		183.2
(-1.5) 		179
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181399_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12153
Sequence Type Exemplar sequence
Representative Public ID ZK682.5 NCBI
Target Description ZK682.5 /REP_DB=WormBase Gene ID /WP=CE05103 /TR=Q23580 /GB=AAA82419.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073001(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073001 NCBI Caenorhabditis elegans ZK682.5 (ZK682.5) mRNA, complete cds. 11/11 None
SNAP00000025484 ENSEMBL cdna:SNAP chromosome:CEL140:V:9287086:9288311:-1 10/11 None
GENEFINDER00000025490 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9287086:9290140:-1 11/11 None
ZK682.5.1 ENSEMBL cdna:known chromosome:CEL140:V:9286732:9290147:-1 gene:ZK682.5 11/11 None
ZK682.5.2 ENSEMBL cdna:known chromosome:CEL140:V:9287086:9290145:-1 gene:ZK682.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9287085-9290140(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK682.5
Entrez Gene 179309 Entrez gene
SwissProt Q23580 EMBL-EBI
WormBase CE05103 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA82419 Hypothetical protein ZK682.5 [Caenorhabditis elegans] ref|NP_505402.1| ZK682.5 [Caenorhabditis elegans] 0.0
blast CAE72147 Hypothetical protein CBG19245 [Caenorhabditis briggsae] 0.0
blast AAA82419 Hypothetical protein ZK682.5 [Caenorhabditis elegans] ref|NP_505402.1| ZK682.5 [Caenorhabditis elegans] 1.0E-105
blast CAE72147 Hypothetical protein CBG19245 [Caenorhabditis briggsae] 1.0E-102
Protein Domains
Database ID Description E-Value
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 6.2E-4
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.0037
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.029
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.053
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.75
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.24
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.065
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.37
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505402.1 1 486-508
ZK682.5.1 1 486-508
ZK682.5.2 1 486-508
SNAP00000025484 1 94-116
GENEFINDER00000025490 1 486-508
Sequence
Target Sequence 
>C. ELEGANS:181399_AT
aaacgatgccgtccaatgtgttccaaaactctttcctcccacaaccaaacgatagaagag
tcatctatgcttgtggtaacccatggtactgtaacagcgaattggaatggttccgaacct
tgctccgcgataacctggatattgatgtcgaaaagccaggatgtaccgctgtatgcacat
catcaccaaatggatgtccagttgaaggaacaccactcagatccgtcgatttctgtcaaa
acaacgaagaagcacaacctcttgtgggaagagcactctcaatggttggatggattattc
tagcggttattatgacaatcttgctcatttcaatctgtcttttggcaatggttcgttatg
gaatgagtcatcagagaaagaagcagaaggacgccgaagttgctgctgaagagtaccatc
atcagactactgccacatctatctacaacgcaccaatctctgtagtggacaggccttatt
ccacagttccaccagtgaacttggatcttccagcagcttac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAACGATGCCGTCCAATGTGTTCCA 363 127 1184 Antisense
GAGTCATCTATGCTTGTGGTAACCC 207 399 1241 Antisense
TGGAATGGTTCCGAACCTTGCTCCG 76 547 1286 Antisense
CCTTGCTCCGCGATAACCTGGATAT 332 269 1301 Antisense
TGTACCGCTGTATGCACATCATCAC 87 561 1345 Antisense
CACCACTCAGATCCGTCGATTTCTG 135 203 1394 Antisense
ACAATCTTGCTCATTTCAATCTGTC 333 115 1498 Antisense
TCAGACTACTGCCACATCTATCTAC 678 623 1605 Antisense
ACAACGCACCAATCTCTGTAGTGGA 370 113 1628 Antisense
TGGACAGGCCTTATTCCACAGTTCC 111 549 1649 Antisense
GAACTTGGATCTTCCAGCAGCTTAC 141 351 1680 Antisense
Sequence Source Affymetrix Proprietary Database