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[181397_at]

Description K09C6.6 /REP_DB=WormBase Gene ID /WP=CE11998 /TR=O16941 /GB=AAB70673.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 45      4grp_total > 0      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 4.8
(-3)
A 		4.6
(-3)
A 		30.2
(0.2)
A 		52.9
(3)
A 		48
B 5
(-2.3)
A 		15.3
(2.5)
A 		16.3
(3)
A 		3.6
(-3)
A 		13
C 26.9
(1)
A 		7.4
(-2.9)
A 		6.7
(-3)
A 		37.1
(3)
A 		30
avr 12.2
(-2.2) 		9.1
(-3) 		17.7
(-0.7) 		31.2
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 6.2
(-2)
A 		14.1
(0.7)
A 		3.5
(-3)
A 		8
(-1.4)
A 		4.2
(-2.8)
A 		20.5
(3)
A 		17
B 11.4
(-1.3)
A 		11.9
(-1.2)
A 		34.1
(3)
A 		5.5
(-2.4)
A 		2.6
(-3)
A 		5.1
(-2.5)
A 		32
C 3.4
(-1.5)
A 		11.6
(3)
A 		2.7
(-1.9)
A 		4
(-1.2)
A 		0.7
(-3)
A 		3.7
(-1.3)
A 		11
avr 7
(-0.5) 		12.5
(2.5) 		13.4
(3) 		5.8
(-1.2) 		2.5
(-3) 		9.8
(1) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 1.7
(-2.4)
A 		1
(-3)
A 		7.9
(3)
A 		7.7
(2.8)
A 		7
B 1.6
(-1.4)
A 		3.8
(3)
A 		3.8
(3)
A 		0.8
(-3)
A 		3
C 8.9
(3)
A 		2.1
(-3)
A 		2.3
(-2.8)
A 		6.3
(0.7)
A 		7
avr 4.1
(1.2) 		2.3
(-3) 		4.7
(2.5) 		4.9
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 1.1
(-2.6)
A 		5
(3)
A 		0.8
(-3)
A 		2
(-1.3)
A 		1.3
(-2.3)
A 		5
(3)
A 		4
B 4
(-0.6)
A 		4
(-0.6)
A 		8.3
(3)
A 		1.5
(-2.7)
A 		1.1
(-3)
A 		1.9
(-2.3)
A 		7
C 1.3
(-1)
A 		3.5
(3)
A 		0.7
(-2.1)
A 		0.8
(-1.9)
A 		0.2
(-3)
A 		1.2
(-1.2)
A 		3
avr 2.1
(-0.8) 		4.2
(3) 		3.3
(1.4) 		1.4
(-2.1) 		0.9
(-3) 		2.7
(0.3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181397_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15718
Sequence Type Exemplar sequence
Representative Public ID K09C6.6 NCBI
Target Description K09C6.6 /REP_DB=WormBase Gene ID /WP=CE11998 /TR=O16941 /GB=AAB70673.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070938(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070938 NCBI Caenorhabditis elegans K09C6.6 (K09C6.6) mRNA, complete cds. 11/11 None
GENEFINDER00000012280 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:843082:845203:1 11/11 None
K09C6.6 ENSEMBL cdna:known chromosome:CEL140:V:844280:845203:1 gene:K09C6.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000012265 1/11 Cross Hyb Matching Probes None
SNAP00000012269 7/11 Cross Hyb Matching Probes None
GENEFINDER00000012283 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:844279-845203(+) 90.85 100.0
chrV:839121-839745(+) 84.81 84.81
Public Domain and Genome References
Gene Title
Ensembl K09C6.6
Entrez Gene 187203 Entrez gene
SwissProt O16941 EMBL-EBI
WormBase CE11998 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB70673 Hypothetical protein K09C6.6 [Caenorhabditis elegans] ref|NP_503339.1| K09C6.6 [Caenorhabditis elegans] 1.0E-101
blast AAB70673 Hypothetical protein K09C6.6 [Caenorhabditis elegans] ref|NP_503339.1| K09C6.6 [Caenorhabditis elegans] 1.0E-99
blast AAC69211 Hypothetical protein F41H8.1 [Caenorhabditis elegans] ref|NP_503336.1| F41H8.1 [Caenorhabditis elegans] 5.0E-92
blast AAC69211 Hypothetical protein F41H8.1 [Caenorhabditis elegans] ref|NP_503336.1| F41H8.1 [Caenorhabditis elegans] 1.0E-90
blast CAE74170 Hypothetical protein CBG21843 [Caenorhabditis briggsae] 2.0E-70
blast CAE74170 Hypothetical protein CBG21843 [Caenorhabditis briggsae] 4.0E-69
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503339.1 3 21-43,63-85,116-138
K09C6.6 3 21-43,63-85,116-138
GENEFINDER00000012280 3 40-62,84-106,137-159
Sequence
Target Sequence 
>C. ELEGANS:181397_AT
tactcaattccgtaaaaccgagcaaagttgcttttctgaaatcgtgttagctgttgcaat
attacacggaattttcgacgcaattttatcatttgccctatccccgccagttcgaatgcc
aaattgcggaactagtggttgctttgtcaatgatcaattccgatattattggggaatttc
caacatggttctgggcttcgttgtgatcctgctttccgtcagcttcttcttcaaaatcaa
ggctgtaaaaaggaagacgccaaatatgggaaattcgaagcttcagcaacataaattcca
gcaggctaatagaacttcgactggaattctcgtgtcctctatgcttctcctcacgacgcc
aagcgtgtgtgttgggctcgttgagcttatgggctactccatattcagactagttgggcc
attttattcagcgagcttgatgtctagtgggatttgcaacggtattaaatttatcgggtg
taatggagatgccaggcaattactcggaaggaaatctcagcaaatgctaactcacacgat
gtcggttgctccaaaatcgctccaattgctccaattat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACTCAATTCCGTAAAACCGAGCAA 466 625 36 Antisense
ATTACACGGAATTTTCGACGCAATT 109 13 96 Antisense
GCAATTTTATCATTTGCCCTATCCC 392 323 115 Antisense
CCGCCAGTTCGAATGCCAAATTGCG 664 261 139 Antisense
TTCCAACATGGTTCTGGGCTTCGTT 640 689 213 Antisense
TTCAGCAACATAAATTCCAGCAGGC 442 685 317 Antisense
GACGCCAAGCGTGTGTGTTGGGCTC 415 381 390 Antisense
GGCTCGTTGAGCTTATGGGCTACTC 485 539 410 Antisense
GGGCTACTCCATATTCAGACTAGTT 319 493 426 Antisense
TCAGCAAATGCTAACTCACACGATG 202 625 552 Antisense
AAATCGCTCCAATTGCTCCAATTAT 296 119 589 Antisense
Sequence Source Affymetrix Proprietary Database