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[181395_at]

Description F29C12.6 /REP_DB=WormBase Gene ID /WP=CE19824 /TR=Q9XV49 /GB=CAB04219.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 39      4grp_total > 04      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 105
1 2 3 4 range
A 24.3
(-1.7)
A 		11.5
(-2.9)
A 		10.6
(-3)
A 		72.1
(3)
A 		62
B 36.6
(-1.1)
A 		9.1
(-2.7)
A 		4.3
(-3)
A 		108.9
(3)
A 		105
C 35.1
(-0.3)
A 		6.9
(-3)
A 		17.3
(-2)
A 		70.3
(3)
A 		63
avr 32
(-1.2) 		9.2
(-3) 		10.7
(-2.9) 		83.8
(3) 		75

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 71
1 2 3 4 5 6 range
A 74.2
(3)
A 		25.9
(-1.5)
A 		9.2
(-3)
A 		31.6
(-0.9)
A 		58.6
(1.6)
A 		56.2
(1.3)
A 		65
B 15.2
(-1.8)
A 		16.3
(-1.6)
A 		9.7
(-2.6)
A 		7.5
(-3)
A 		44.8
(3)
A 		22.8
(-0.5)
A 		37
C 3.4
(-3)
A 		27.9
(1.2)
A 		5.3
(-2.7)
A 		22.4
(0.3)
A 		32.4
(2)
A 		38
(3)
A 		35
avr 30.9
(0.7) 		23.4
(-0.5) 		8.1
(-3) 		20.5
(-1) 		45.3
(3) 		39
(2) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 8.9
(1.7)
A 		2.5
(-3)
A 		2.8
(-2.8)
A 		10.6
(3)
A 		8
B 11.7
(-0.1)
A 		2.3
(-2.6)
A 		1
(-3)
A 		23.2
(3)
A 		22
C 11.6
(2.9)
A 		2
(-3)
A 		6
(-0.6)
A 		11.8
(3)
A 		10
avr 10.7
(0.9) 		2.3
(-3) 		3.3
(-2.5) 		15.2
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 13.7
(1.5)
A 		9.2
(-0.2)
A 		2
(-3)
A 		8
(-0.7)
A 		17.7
(3)
A 		13.7
(1.5)
A 		16
B 5.3
(-1.8)
A 		5.4
(-1.7)
A 		2.3
(-2.9)
A 		2
(-3)
A 		18.2
(3)
A 		8.5
(-0.6)
A 		16
C 1.3
(-3)
A 		8.5
(0.8)
A 		1.4
(-2.9)
A 		4.5
(-1.3)
A 		10.5
(1.8)
A 		12.7
(3)
A 		11
avr 6.8
(-0.8) 		7.7
(-0.4) 		1.9
(-3) 		4.8
(-1.7) 		15.5
(3) 		11.6
(1.3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181395_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3271
Sequence Type Exemplar sequence
Representative Public ID F29C12.6 NCBI
Target Description F29C12.6 /REP_DB=WormBase Gene ID /WP=CE19824 /TR=Q9XV49 /GB=CAB04219.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064388(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064388 NCBI Caenorhabditis elegans F29C12.6 (F29C12.6) mRNA, complete cds. 11/11 None
F29C12.6 ENSEMBL cdna:known chromosome:CEL140:II:13129798:13130085:1 gene:F29C12.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000014929 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13129794-13130082(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F29C12.6
Entrez Gene 185116 Entrez gene
SwissProt Q9XV49 EMBL-EBI
WormBase CE19824 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04219 Hypothetical protein F29C12.6 [Caenorhabditis elegans] ref|NP_496789.1| F29C12.6 [Caenorhabditis elegans] 4.0E-48
Sequence
Target Sequence 
>C. ELEGANS:181395_AT
acacccgacacaatgagctcaaactggaagttgaaaagctccattccctagagcaaaaat
gcctccaaggacttgcaaaccatgagatgaacttccagcagaacgtcaccaataagccag
agagctatgagcagcaatttgccaagacaacaagagatgcaatggtcagtacgtactcct
tcttgtacttgaacaatctgaaggaagagaagaccatcgagcttcagggaatcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACACCCGACACAATGAGCTCAAACT 642 109 35 Antisense
GAAGTTGAAAAGCTCCATTCCCTAG 532 337 61 Antisense
TTCCCTAGAGCAAAAATGCCTCCAA 596 695 78 Antisense
ATGCCTCCAAGGACTTGCAAACCAT 488 41 93 Antisense
GATGAACTTCCAGCAGAACGTCACC 665 411 120 Antisense
GAACGTCACCAATAAGCCAGAGAGC 183 347 135 Antisense
GCCAGAGAGCTATGAGCAGCAATTT 197 279 150 Antisense
GCAGCAATTTGCCAAGACAACAAGA 250 313 165 Antisense
GATGCAATGGTCAGTACGTACTCCT 315 413 190 Antisense
GTACGTACTCCTTCTTGTACTTGAA 276 459 203 Antisense
AAGACCATCGAGCTTCAGGGAATCG 155 153 244 Antisense
Sequence Source Affymetrix Proprietary Database