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[181394_at]

Description F23F1.4 /REP_DB=WormBase Gene ID /WP=CE09604 /TR=O17065 /GB=AAB70327.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 21      4grp_high_8_8 > 61      6grp_total > 32      4grp_total > 59      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 369
1 2 3 4 range
A 218.5
(0.6)
P 		333.1
(2.6)
P 		355.8
(3)
P 		14
(-3)
A 		342
B 261.6
(0.6)
P 		276.6
(1)
P 		353.3
(3)
P 		120.4
(-3)
P 		233
C 275.7
(0.5)
P 		382.8
(3)
P 		364.1
(2.6)
P 		124.1
(-3)
A 		259
avr 251.9
(0.7) 		330.8
(2.4) 		357.7
(3) 		86.2
(-3) 		272

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 341
1 2 3 4 5 6 range
A 285.7
(1.6)
P 		291.1
(1.8)
P 		313.7
(2.3)
P 		340.6
(3)
P 		194.4
(-0.6)
P 		99.5
(-3)
A 		241
B 271.1
(0.1)
P 		264.9
(-0)
P 		435.3
(3)
P 		183.8
(-1.5)
P 		152.7
(-2.1)
P 		99.6
(-3)
P 		336
C 300.9
(1.8)
P 		336.8
(2.7)
P 		350.4
(3)
P 		276.3
(1.3)
P 		188.7
(-0.8)
P 		94.6
(-3)
P 		256
avr 285.9
(1.2) 		297.6
(1.5) 		366.5
(3) 		266.9
(0.8) 		178.6
(-1.2) 		97.9
(-3) 		269
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 125
1 2 3 4 range
A 79.6
(2.1)
P 		72.3
(1.6)
P 		93
(3)
P 		2
(-3)
A 		91
B 83.4
(3)
P 		68.3
(1.4)
P 		81.9
(2.8)
P 		25.7
(-3)
P 		58
C 91.3
(1)
P 		110.1
(2)
P 		126.9
(3)
P 		20.9
(-3)
A 		106
avr 84.8
(1.9) 		83.6
(1.8) 		100.6
(3) 		16.2
(-3) 		84

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 87
1 2 3 4 5 6 range
A 52.7
(-0.8)
P 		103.5
(3)
P 		68.3
(0.3)
P 		86.4
(1.7)
P 		58.7
(-0.4)
P 		24.2
(-3)
A 		79
B 94.3
(2)
P 		88.2
(1.5)
P 		105.7
(3)
P 		48.7
(-2)
P 		62
(-0.8)
P 		37.1
(-3)
P 		69
C 111.5
(3)
P 		102.8
(2.3)
P 		89.2
(1.3)
P 		55.6
(-1.2)
P 		61.1
(-0.8)
P 		31.7
(-3)
P 		80
avr 86.2
(1.9) 		98.2
(3) 		87.7
(2.1) 		63.6
(-0.1) 		60.6
(-0.4) 		31
(-3) 		67
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181394_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5300
Sequence Type Exemplar sequence
Representative Public ID F23F1.4 NCBI
Target Description F23F1.4 /REP_DB=WormBase Gene ID /WP=CE09604 /TR=O17065 /GB=AAB70327.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061237(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061237 NCBI Caenorhabditis elegans F23F1.4 (F23F1.4) mRNA, complete cds. 10/11 None
F23F1.4 ENSEMBL cdna:known chromosome:CEL140:II:27611:28158:-1 gene:F23F1.4 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000004420 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:27483-28158(-) 92.5 100.0
Public Domain and Genome References
Gene Title
Ensembl F23F1.4
Entrez Gene 184902 Entrez gene
SwissProt O17065 EMBL-EBI
WormBase CE32635 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB70327 Hypothetical protein F23F1.4 [Caenorhabditis elegans] ref|NP_493638.2| F23F1.4 [Caenorhabditis elegans] 6.0E-84
Sequence
Target Sequence 
>C. ELEGANS:181394_AT
ggagtcagacacaccgatgctaggaagaagctcaaccacaaatgcaactatcaggacatt
tggctggttcccggaagggctgacgcaagttgcagtatcacgacccggagcaaaaaaaat
attggatattaacccgagccaagttcatataaagccagacgttgttcgattcccaggatg
ctttactttggaaattaagaatgtcaaagttaaagatctaccagaagcgcttgacaatag
tttttttgcgaaagcggaatatcagtggtggaatgtaaaggacttttccaacatgaagtg
tcaaaacgcgagtaataatggatgtggtggctatggaaacaattgttatttttgtgatgt
atgtgaatctttgaccaatttggagcagaatgaagaagaccaatctaatagtttggctgg
gcaattgcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGTCAGACACACCGATGCTAGGA 527 517 15 Antisense
TCAGGACATTTGGCTGGTTCCCGGA 228 621 65 Antisense
GTTCCCGGAAGGGCTGACGCAAGTT 529 147 81 Antisense
GACGCAAGTTGCAGTATCACGACCC 443 379 96 Antisense
GCAGTATCACGACCCGGAGCAAAAA 578 311 106 Antisense
GGATATTAACCCGAGCCAAGTTCAT 2 509 138 Antisense
AAAGCCAGACGTTGTTCGATTCCCA 227 125 165 Antisense
GTTGTTCGATTCCCAGGATGCTTTA 14 439 175 Antisense
AGATCTACCAGAAGCGCTTGACAAT 408 65 228 Antisense
AGGACTTTTCCAACATGAAGTGTCA 528 53 293 Antisense
TAATAGTTTGGCTGGGCAATTGCAA 170 599 420 Antisense
Sequence Source Affymetrix Proprietary Database