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[181393_at]

Description F17C11.6 /REP_DB=WormBase Gene ID /WP=CE05653 /TR=Q19517 /GB=CAA96628.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 91      6grp_high1_10_10 > 09      4grp_highest_8_8 > 41      4grp_high_8_8 > 42      6grp_highest_nonorm > 82      6grp_total > 29      4grp_total > 53      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 915
1 2 3 4 range
A 1111.5
(3)
P 		602.2
(-0.5)
P 		419.9
(-1.7)
P 		236.1
(-3)
P 		875
B 851.7
(3)
P 		630.6
(1)
P 		543.7
(0.2)
P 		196.2
(-3)
P 		656
C 806.4
(3)
P 		610.8
(0.9)
P 		539.7
(0.2)
P 		240.8
(-3)
P 		566
avr 923.2
(3) 		614.5
(0.3) 		501.1
(-0.6) 		224.4
(-3) 		699

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 191
1 2 3 4 5 6 range
A 296
(-0.5)
P 		305.6
(0)
P 		332.9
(1.6)
P 		355.9
(3)
P 		254.1
(-3)
P 		260.6
(-2.6)
P 		102
B 392.9
(3)
P 		380.4
(2.2)
P 		308.4
(-2.2)
P 		296
(-3)
P 		385.8
(2.6)
P 		391.6
(2.9)
P 		97
C 445.4
(3)
P 		367.8
(0.4)
P 		266.3
(-3)
P 		406.9
(1.7)
P 		430.3
(2.5)
P 		357
(0)
P 		179
avr 378.1
(3) 		351.3
(0.9) 		302.5
(-3) 		352.9
(1) 		356.7
(1.3) 		336.4
(-0.3) 		76
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 370
1 2 3 4 range
A 404.7
(3)
P 		130.7
(-1.4)
P 		109.8
(-1.8)
P 		34.6
(-3)
P 		370
B 271.6
(3)
P 		155.7
(-0)
P 		126
(-0.8)
P 		41.8
(-3)
P 		230
C 267
(3)
P 		175.6
(0.6)
P 		188.1
(0.9)
P 		40.6
(-3)
P 		226
avr 314.4
(3) 		154
(-0.5) 		141.3
(-0.8) 		39
(-3) 		275

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 111
1 2 3 4 5 6 range
A 54.6
(-3)
P 		108.7
(3)
P 		72.5
(-1)
P 		90.3
(1)
P 		76.7
(-0.5)
P 		63.4
(-2)
P 		54
B 136.7
(1.5)
P 		126.6
(0.8)
P 		74.9
(-3)
P 		78.4
(-2.7)
P 		156.8
(3)
P 		146
(2.2)
P 		82
C 165.1
(3)
P 		112.2
(-0.3)
P 		67.8
(-3)
P 		81.8
(-2.1)
P 		139.2
(1.4)
P 		119.5
(0.2)
P 		97
avr 118.8
(2.4) 		115.8
(2) 		71.7
(-3) 		83.5
(-1.7) 		124.2
(3) 		109.6
(1.3) 		53
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181393_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12532
Sequence Type Exemplar sequence
Representative Public ID F17C11.6 NCBI
Target Description F17C11.6 /REP_DB=WormBase Gene ID /WP=CE05653 /TR=Q19517 /GB=CAA96628.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028640, NM_073395
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073395 NCBI Caenorhabditis elegans F17C11.6 (F17C11.6) mRNA, complete cds. None
F17C11.6 ENSEMBL cdna:known chromosome:CEL140:V:10957708:10958354:1 gene:F17C11.6 None
F17C11.13 ENSEMBL cdna:known chromosome:CEL140:V:10958608:10959478:1 gene:F17C11.13 None
GENEFINDER00000033910 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10957717:10958221:1 None
NM_001028640 NCBI Caenorhabditis elegans F17C11.13 (F17C11.13) mRNA, complete cds. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10957716-10959403(+) 100.0 100.0
Public Domain and Genome References
Gene Title

Ensembl F17C11.6
F17C11.13
Entrez Gene 184616 Entrez gene
3565104 Entrez gene
SwissProt Q5WRN7 EMBL-EBI
Q19517 EMBL-EBI
WormBase CE37352 Wormbase
CE37353 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAH60788 Hypothetical protein F17C11.13 [Caenorhabditis elegans] ref|NP_001023811.1| F17C11.13 [Caenorhabditis elegans] 3.0E-55
blast CAA96628 Hypothetical protein F17C11.6 [Caenorhabditis elegans] ref|NP_505796.2| F17C11.6 [Caenorhabditis elegans] 7.0E-53
blast CAA96628 Hypothetical protein F17C11.6 [Caenorhabditis elegans] ref|NP_505796.2| F17C11.6 [Caenorhabditis elegans] 2.0E-38
blast CAE75133 Hypothetical protein CBG23061 [Caenorhabditis briggsae] 2.0E-19
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505796.2 2 45-67,100-122
NP_001023811.1 1 37-59
F17C11.6 2 45-67,100-122
F17C11.13 1 37-59
GENEFINDER00000033910 1 41-63
Sequence
Target Sequence 
>C. ELEGANS:181393_AT
agtgaaagatcatgcgtctccaattttattcggttctgtaagatttcaagacatgaatcg
tgaaaagcaaatggaagcgttgaaagatttaacatttcgtttaatattcgtcgttttatt
accttacatttcaactatggcatgttcatttggagtgtcagtcggtcttggaatcctaat
caatgaggctatggcaaaactattcagctcgtatgatgacctctattgtcgtctatttgt
catttccaattcagtttactttgtgactttgtatgctacatttttgctgagtatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTGAAAGATCATGCGTCTCCAATT 684 59 33 Antisense
GCGTCTCCAATTTTATTCGGTTCTG 483 291 46 Antisense
TATTCGTCGTTTTATTACCTTACAT 332 665 137 Antisense
TACCTTACATTTCAACTATGGCATG 29 649 152 Antisense
GGCATGTTCATTTGGAGTGTCAGTC 581 535 171 Antisense
AGTGTCAGTCGGTCTTGGAATCCTA 445 59 186 Antisense
ATGGCAAAACTATTCAGCTCGTATG 315 51 223 Antisense
CAGCTCGTATGATGACCTCTATTGT 704 203 237 Antisense
ACCTCTATTGTCGTCTATTTGTCAT 8 89 251 Antisense
TTGTCATTTCCAATTCAGTTTACTT 701 707 269 Antisense
GTATGCTACATTTTTGCTGAGTATG 171 455 303 Antisense
Sequence Source Affymetrix Proprietary Database