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[181392_at]

Description F23F1.5 /REP_DB=WormBase Gene ID /WP=CE09605 /TR=O17066 /GB=AAB70323.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 56      6grp_high1_10_10 > 65      4grp_highest_8_8 > 27      4grp_high_8_8 > 63      6grp_highest_nonorm > 82      6grp_total > 65      4grp_total > 56      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 210.4
(-1.8)
P 		249.1
(3)
P 		245.6
(2.6)
P 		200.3
(-3)
P 		49
B 224.2
(2.2)
P 		205.3
(-3)
P 		226.9
(3)
P 		212.2
(-1.1)
P 		22
C 232.9
(3)
P 		188.8
(-3)
P 		224
(1.8)
P 		222.7
(1.6)
P 		44
avr 222.5
(0.2) 		214.4
(-2.2) 		232.2
(3) 		211.7
(-3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 150
1 2 3 4 5 6 range
A 373.5
(1.8)
P 		254.5
(-3)
P 		358
(1.1)
P 		343.1
(0.5)
P 		331.7
(0.1)
P 		404.6
(3)
P 		150
B 332.4
(-0.3)
P 		323.6
(-1.3)
P 		360.6
(3)
P 		351.8
(2)
P 		309.5
(-3)
P 		335.2
(0)
P 		51
C 292.2
(-3)
P 		382.6
(3)
P 		316
(-1.4)
P 		340.4
(0.2)
P 		304.7
(-2.2)
P 		360.2
(1.5)
P 		90
avr 332.7
(-1) 		320.2
(-2.4) 		344.9
(0.5) 		345.1
(0.5) 		315.3
(-3) 		366.7
(3) 		51
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 76.6
(3)
P 		54.1
(0.1)
P 		64.2
(1.4)
P 		29.3
(-3)
P 		47
B 71.5
(3)
P 		50.7
(-1.7)
P 		52.6
(-1.3)
P 		45.2
(-3)
P 		26
C 77.1
(2.9)
P 		54.3
(-0.5)
P 		78.1
(3)
P 		37.5
(-3)
P 		41
avr 75.1
(3) 		53
(-0.5) 		65
(1.4) 		37.3
(-3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 68.8
(-3)
P 		90.5
(1.2)
P 		78
(-1.2)
P 		87
(0.5)
P 		100.1
(3)
P 		98.5
(2.7)
P 		31
B 115.6
(1.4)
P 		107.7
(0.2)
P 		87.6
(-3)
P 		93.2
(-2.1)
P 		125.7
(3)
P 		125
(2.9)
P 		38
C 108.3
(1.6)
P 		116.7
(2.6)
P 		80.4
(-1.6)
P 		68.5
(-3)
P 		98.6
(0.5)
P 		120.6
(3)
P 		52
avr 97.6
(-0.1) 		105
(1.2) 		82
(-3) 		82.9
(-2.8) 		108.1
(1.8) 		114.7
(3) 		33
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181392_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4793
Sequence Type Exemplar sequence
Representative Public ID F23F1.5 NCBI
Target Description F23F1.5 /REP_DB=WormBase Gene ID /WP=CE09605 /TR=O17066 /GB=AAB70323.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061238(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061238 NCBI Caenorhabditis elegans F23F1.5 (F23F1.5) mRNA, complete cds. 11/11 None
SNAP00000004421 ENSEMBL cdna:SNAP chromosome:CEL140:II:30116:31574:-1 11/11 None
GENEFINDER00000004432 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:30116:31574:-1 11/11 None
F23F1.5 ENSEMBL cdna:known chromosome:CEL140:II:30116:31574:-1 gene:F23F1.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:30115-31574(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F23F1.5
Entrez Gene 173383 Entrez gene
SwissProt O17066 EMBL-EBI
WormBase CE09605 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.18566.1.S1_S_AT similar to RNA, U transporter 1 cfa
CANINE_2:CFA.2885.1.S1_AT similar to RNA, U transporter 1 cfa
CANINE_2:CFAAFFX.27628.1.S1_AT similar to RNA, U transporter 1 cfa
DROSOPHILA_2:1632358_AT dm
DROSGENOME1:153978_AT dm
DROSGENOME1:148060_AT dm
HG-U133_PLUS_2:207438_S_AT RNA, U transporter 1 hs
HG-U133A:207438_S_AT RNA, U transporter 1 hs
HG-FOCUS:207438_S_AT RNA, U transporter 1 hs
HG-U133A_2:207438_S_AT RNA, U transporter 1 hs
HU35KSUBA:HUM_ALU_AT RNA, U transporter 1 hs
HU35KSUBB:HUM_ALU_AT RNA, U transporter 1 hs
HU35KSUBC:HUM_ALU_AT RNA, U transporter 1 hs
HU35KSUBD:HUM_ALU_AT RNA, U transporter 1 hs
HUGENEFL:HUM_ALU_AT RNA, U transporter 1 hs
HC-G110:HUM_ALU_AT RNA, U transporter 1 hs
HU35KSUBA:RC_AA404426_AT RNA, U transporter 1 hs
U133_X3P:G5031832_3P_A_AT RNA, U transporter 1 hs
HG-U95AV2:33342_AT RNA, U transporter 1 hs
HG-U95C:66290_AT RNA, U transporter 1 hs
MOUSE430_2:1445434_AT RNA, U transporter 1 mm
MOE430B:1445434_AT RNA, U transporter 1 mm
MG-U74BV2:113974_AT RNA, U transporter 1 mm
MG-U74CV2:168513_F_AT RNA, U transporter 1 mm
MOE430B:1452808_AT RNA, U transporter 1 mm
MOUSE430_2:1452808_AT RNA, U transporter 1 mm
MOE430B:1441942_X_AT RNA, U transporter 1 mm
MOUSE430_2:1441942_X_AT RNA, U transporter 1 mm
RAE230B:1378639_AT RNA, U transporter 1 rn
RAT230_2:1378639_AT RNA, U transporter 1 rn
RG-U34C:RC_AI177094_AT RNA, U transporter 1 rn
Protein Similarities
Method ID Description E-Value
blast AAB70323 Hypothetical protein F23F1.5 [Caenorhabditis elegans] ref|NP_493639.1| F23F1.5 [Caenorhabditis elegans] 1.0E-180
blast CAE62832 Hypothetical protein CBG07011 [Caenorhabditis briggsae] 1.0E-139
blast XP_544780 PREDICTED: similar to RNA, U transporter 1 [Canis familiaris] 2.0E-59
Sequence
Target Sequence 
>C. ELEGANS:181392_AT
aacggacacttgtcgttgcatcacgaggcttcacagttgcatataacaaaggcggaagag
aagtatcgcgatttcagtctcgccttcctggtggaaatactcgtgctaaaaatcaggctt
ggacaattcttgactgcatctactcgaatcagacatactatgtgctcgatcttctttcat
ggaatgcacacgaatatgttgagagtccatacgatttccgccaatttatgctaaagtcta
aacttgaagaggctcctgaactagcgaaatctacgcctggcttcaggaatattttctcac
cgattcccagctgtccgtgctcccaagatcagatggcggagcttatgaaaaacgagatca
gtttccgtctcgatggactcctcttctatcataattcggttgtataccaacctggacaat
cacctctagtcggatggcttaaaccatggatgttacctgaaatcctcaatgtcccggtac
cggaaaaatataaggccgagtcaaacggacaatcatcttcacagttcatcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACGGACACTTGTCGTTGCATCACG 495 143 392 Antisense
GCATCACGAGGCTTCACAGTTGCAT 451 309 409 Antisense
AGTATCGCGATTTCAGTCTCGCCTT 345 63 453 Antisense
GACAATTCTTGACTGCATCTACTCG 202 365 513 Antisense
GACATACTATGTGCTCGATCTTCTT 272 371 543 Antisense
TTGAGAGTCCATACGATTTCCGCCA 118 705 590 Antisense
AGATCAGTTTCCGTCTCGATGGACT 205 65 746 Antisense
GACTCCTCTTCTATCATAATTCGGT 354 375 767 Antisense
GACAATCACCTCTAGTCGGATGGCT 284 365 806 Antisense
GTTACCTGAAATCCTCAATGTCCCG 4 447 843 Antisense
GGACAATCATCTTCACAGTTCATCG 253 527 898 Antisense
Sequence Source Affymetrix Proprietary Database