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[181391_at]

Description C08G5.6 /REP_DB=WormBase Gene ID /WP=CE19695 /TR=Q9TZL1 /GB=AAC67417.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 65      4grp_high_8_8 > 12      6grp_total > 75      4grp_total > 12      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 204
1 2 3 4 range
A 125.1
(-0.2)
P 		72.4
(-1.7)
A 		29.8
(-3)
P 		234.1
(3)
P 		204
B 75.2
(-2.7)
M 		87.8
(-2)
P 		69.4
(-3)
P 		184.1
(3)
P 		115
C 107.2
(0)
P 		36.7
(-3)
A 		65.8
(-1.7)
P 		176.3
(3)
P 		140
avr 102.5
(-1) 		65.6
(-2.6) 		55
(-3) 		198.2
(3) 		143

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 85
1 2 3 4 5 6 range
A 94.7
(1.1)
A 		56
(-3)
P 		90.4
(0.6)
P 		106.6
(2.3)
P 		81.6
(-0.3)
A 		113
(3)
P 		57
B 120.3
(2.2)
P 		98.6
(-1.3)
P 		125.6
(3)
P 		92.1
(-2.3)
P 		87.8
(-3)
P 		112.6
(0.9)
P 		38
C 78.1
(-1.6)
P 		58.8
(-3)
P 		112.4
(0.9)
P 		140.5
(3)
A 		96.3
(-0.2)
P 		129.8
(2.2)
P 		82
avr 97.7
(0.4) 		71.1
(-3) 		109.5
(1.9) 		113.1
(2.3) 		88.6
(-0.8) 		118.5
(3) 		47
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 45.5
(3)
P 		15.7
(-1.7)
A 		7.8
(-3)
P 		34.3
(1.2)
P 		38
B 24
(-0.9)
M 		21.7
(-1.5)
P 		16.1
(-3)
P 		39.2
(3)
P 		23
C 35.5
(3)
P 		10.5
(-3)
A 		22.9
(-0)
P 		29.7
(1.6)
P 		25
avr 35
(3) 		16
(-2.9) 		15.6
(-3) 		34.4
(2.8) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 17.5
(-3)
A 		19.9
(-1.6)
P 		19.7
(-1.7)
P 		27
(2.7)
P 		24.6
(1.3)
A 		27.5
(3)
P 		10
B 41.9
(3)
P 		32.8
(-0.1)
P 		30.5
(-0.9)
P 		24.4
(-3)
P 		35.7
(0.9)
P 		42
(3)
P 		18
C 29
(-0.4)
P 		17.9
(-3)
P 		28.6
(-0.5)
P 		28.3
(-0.6)
A 		31.2
(0.1)
P 		43.4
(3)
P 		26
avr 29.5
(-0.4) 		23.5
(-3) 		26.3
(-1.8) 		26.6
(-1.7) 		30.5
(-0) 		37.6
(3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181391_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5332
Sequence Type Exemplar sequence
Representative Public ID C08G5.6 NCBI
Target Description C08G5.6 /REP_DB=WormBase Gene ID /WP=CE19695 /TR=Q9TZL1 /GB=AAC67417.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061403(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061403 NCBI Caenorhabditis elegans C08G5.6 (C08G5.6) mRNA, complete cds. 11/11 None
GENEFINDER00000029172 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:771007:772224:1 9/11 None
C08G5.6 ENSEMBL cdna:known chromosome:CEL140:II:770428:773027:1 gene:C08G5.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000029171 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:770427-773027(+) 90.45 100.0
Public Domain and Genome References
Gene Title
Ensembl C08G5.6
Entrez Gene 182428 Entrez gene
SwissProt Q9TZL1 EMBL-EBI
WormBase CE19695 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC67417 Hypothetical protein C08G5.6 [Caenorhabditis elegans] ref|NP_493804.1| C08G5.6 [Caenorhabditis elegans] 1.0E-156
blast AAC67417 Hypothetical protein C08G5.6 [Caenorhabditis elegans] ref|NP_493804.1| C08G5.6 [Caenorhabditis elegans] 2.0E-95
blast CAE69747 Hypothetical protein CBG16023 [Caenorhabditis briggsae] 3.0E-71
blast CAE69747 Hypothetical protein CBG16023 [Caenorhabditis briggsae] 4.0E-71
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493804.1 5 10-27,46-68,72-94,107-129,139-161
C08G5.6 5 10-27,46-68,72-94,107-129,139-161
GENEFINDER00000029172 3 29-51,64-86,96-118
Sequence
Target Sequence 
>C. ELEGANS:181391_AT
gcccgggtattttctaccgtatgctgtgatgaaagcggttaggattgtcacattggctat
tgtatcattcgcaatactattctcacctacacttatcaaaacatacttctatgccagtat
ctacggactttttgagacactcgccggagcaattgcgttagaggtaacaattcgatgtat
ccgagagaccaagcgaatccgaagtggtcgacggcggcaaactcgagccgacgcaaacct
ccagccaaatatcgtatcgaaaagtactctaattcaagaaaattgctttattctggtctc
ctggcgcttaactactaagaagcaaagaccaagaggtaactgggaaaaagagggttcaaa
acttttctggagcatttatgagcacaaaacaaaaccaaaaaaaaaaacaaaacccaaaaa
aaaacagaatccctttgtcttttcacaacaaaaaagaaaaaaagaaaaggttccatttca
aaaacgaatgtttgtttacctcacttttcctcaaattgatgggctccacgagctccgcgg
agcccaactttacactctacctcttttctgcaaaacaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCCGGGTATTTTCTACCGTATGCT 572 279 324 Antisense
CAATACTATTCTCACCTACACTTAT 127 179 395 Antisense
ACTTCTATGCCAGTATCTACGGACT 406 103 428 Antisense
CTACGGACTTTTTGAGACACTCGCC 133 225 444 Antisense
GACACTCGCCGGAGCAATTGCGTTA 483 367 459 Antisense
GTATCCGAGAGACCAAGCGAATCCG 504 453 500 Antisense
GGTCGACGGCGGCAAACTCGAGCCG 236 495 529 Antisense
GCAAACCTCCAGCCAAATATCGTAT 671 317 556 Antisense
AAAATTGCTTTATTCTGGTCTCCTG 91 135 602 Antisense
AACAGAATCCCTTTGTCTTTTCACA 128 137 746 Antisense
CTCTACCTCTTTTCTGCAAAACACA 107 231 878 Antisense
Sequence Source Affymetrix Proprietary Database