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[181390_at]

Description F49H6.12 /REP_DB=WormBase Gene ID /WP=CE19879 /TR=Q9XUZ9 /GB=CAB04445.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 63      4grp_total > 49      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 33
(-3)
A 		67.7
(1.5)
P 		79.6
(3)
P 		38.8
(-2.3)
A 		47
B 65.5
(-2.2)
P 		79.4
(0.3)
A 		94.7
(3)
M 		60.7
(-3)
A 		34
C 17.9
(-2.4)
A 		72.6
(3)
P 		45.9
(0.3)
A 		12.3
(-3)
A 		60
avr 38.8
(-2.8) 		73.2
(3) 		73.4
(3) 		37.3
(-3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 82
1 2 3 4 5 6 range
A 13
(-3)
A 		59.3
(3)
A 		54.4
(2.4)
A 		56.6
(2.7)
A 		41
(0.6)
A 		34
(-0.3)
A 		46
B 40
(-3)
M 		42.3
(-2.8)
P 		95.3
(3)
A 		54.3
(-1.4)
A 		49.3
(-2)
A 		46.8
(-2.3)
A 		55
C 42.5
(-0.9)
A 		27.3
(-3)
A 		55.9
(0.9)
A 		43
(-0.9)
A 		71.5
(3)
A 		35.7
(-1.9)
A 		44
avr 31.8
(-3) 		43
(-1.2) 		68.5
(3) 		51.3
(0.2) 		53.9
(0.6) 		38.8
(-1.9) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 12
(-0.5)
A 		14.7
(0.6)
P 		20.8
(3)
P 		5.7
(-3)
A 		15
B 20.9
(2.3)
P 		19.6
(1.5)
A 		21.9
(3)
M 		12.9
(-3)
A 		9
C 5.9
(-1.8)
A 		20.9
(3)
P 		16
(1.4)
A 		2.1
(-3)
A 		19
avr 12.9
(-0.2) 		18.4
(2.4) 		19.6
(3) 		6.9
(-3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 2.4
(-3)
A 		21.1
(3)
A 		11.9
(0)
A 		14.4
(0.9)
A 		12.4
(0.2)
A 		8.3
(-1.1)
A 		19
B 13.9
(-3)
M 		14.1
(-2.9)
P 		23.1
(3)
A 		14.4
(-2.7)
A 		20
(1)
A 		17.4
(-0.7)
A 		9
C 15.8
(0)
A 		8.3
(-3)
A 		14.2
(-0.6)
A 		8.7
(-2.8)
A 		23.1
(3)
A 		11.9
(-1.5)
A 		15
avr 10.7
(-3) 		14.5
(-0.1) 		16.4
(1.4) 		12.5
(-1.6) 		18.5
(3) 		12.5
(-1.6) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181390_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12891
Sequence Type Exemplar sequence
Representative Public ID F49H6.12 NCBI
Target Description F49H6.12 /REP_DB=WormBase Gene ID /WP=CE19879 /TR=Q9XUZ9 /GB=CAB04445.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074908(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074908 NCBI Caenorhabditis elegans F49H6.12 (F49H6.12) mRNA, complete cds. 11/11 None
GENEFINDER00000000015 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17022537:17024039:-1 11/11 None
F49H6.12 ENSEMBL cdna:known chromosome:CEL140:V:17022537:17024039:-1 gene:F49H6.12 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000000008 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17022536-17024039(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F49H6.12
Entrez Gene 186079 Entrez gene
SwissProt Q9XUZ9 EMBL-EBI
WormBase CE19879 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04445 Hypothetical protein F49H6.12 [Caenorhabditis elegans] ref|NP_507309.1| F49H6.12 [Caenorhabditis elegans] 1.0E-89
blast CAB04437 Hypothetical protein F49H6.8 [Caenorhabditis elegans] ref|NP_507310.1| F49H6.8 [Caenorhabditis elegans] 9.0E-13
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507309.1 2 88-110,155-172
F49H6.12 2 88-110,155-172
GENEFINDER00000000015 2 88-110,155-172
Sequence
Target Sequence 
>C. ELEGANS:181390_AT
ttcttgtcgttgtggccaatcgtgaagctactgctcaaccggcaggaagtgtggttgcat
tccgaacaggaggatctgccgttggtgcaagccaatctactggtcaaaatggaggaccgg
atgtaagaattcttagtggtgacagaggaggttccgtaggtgaacgtttgaaaactacgg
aatccccaaaaatcgccacaacagcggagccagcagcacccaagtcagccgccggtccaa
ttgttcttctcaccattttggcagtcattgttgctaatttgactgcaccaccagcagaaa
taataaagcccagggatgtcaatggtgtcattccatcagagtcagctgaagtgataaaaa
gagccattccaccacagtatcttccgcagaacgatgtcttgaacgcaacaatggcatcac
ccaattcagccac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTTGTCGTTGTGGCCAATCGTGA 54 689 47 Antisense
AATCGTGAAGCTACTGCTCAACCGG 617 167 64 Antisense
GAAGTGTGGTTGCATTCCGAACAGG 238 335 92 Antisense
CCGAACAGGAGGATCTGCCGTTGGT 464 261 108 Antisense
TGGTGCAAGCCAATCTACTGGTCAA 392 553 129 Antisense
GTTCTTCTCACCATTTTGGCAGTCA 295 443 289 Antisense
GTTGCTAATTTGACTGCACCACCAG 186 437 316 Antisense
AGCCCAGGGATGTCAATGGTGTCAT 8 83 353 Antisense
TGGTGTCATTCCATCAGAGTCAGCT 155 553 369 Antisense
ACCACAGTATCTTCCGCAGAACGAT 668 83 417 Antisense
CAATGGCATCACCCAATTCAGCCAC 506 183 455 Antisense
Sequence Source Affymetrix Proprietary Database