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[181389_at]

Description T15D6.11 /REP_DB=WormBase Gene ID /WP=CE13700 /TR=O02318 /GB=CAB05624.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 01      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 2.4
(-3)
A 		10.9
(-2.2)
A 		2.4
(-3)
A 		63.5
(3)
A 		61
B 10.8
(-1.2)
A 		2.5
(-3)
A 		29.9
(3)
A 		27.4
(2.5)
A 		27
C 4.4
(-2.8)
A 		3.1
(-2.9)
A 		2.5
(-3)
A 		52
(3)
A 		50
avr 5.9
(-2.9) 		5.5
(-3) 		11.6
(-2.1) 		47.6
(3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 3.1
(-1.5)
A 		6
(1.2)
A 		7.4
(2.4)
A 		1.5
(-3)
A 		3.8
(-0.9)
A 		8
(3)
A 		7
B 1.3
(-3)
A 		5.3
(-0.9)
A 		1.4
(-2.9)
A 		1.5
(-2.9)
A 		12.5
(3)
A 		3.4
(-1.9)
A 		11
C 2.1
(-3)
A 		4.8
(1.4)
A 		5.8
(3)
A 		3.2
(-1.2)
A 		4.8
(1.4)
A 		2.4
(-2.5)
A 		4
avr 2.2
(-2.9) 		5.4
(1) 		4.9
(0.4) 		2.1
(-3) 		7
(3) 		4.6
(0.1) 		5
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 0.9
(-2.8)
A 		2.4
(-1.8)
A 		0.6
(-3)
A 		9.3
(3)
A 		9
B 3.4
(-0.3)
A 		0.6
(-3)
A 		6.9
(3)
A 		5.8
(2)
A 		6
C 1.5
(-2.5)
A 		0.9
(-3)
A 		0.9
(-3)
A 		8.8
(3)
A 		8
avr 1.9
(-2.5) 		1.3
(-3) 		2.8
(-1.7) 		8
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 0.6
(-2.3)
A 		2.1
(3)
A 		1.6
(1.2)
A 		0.4
(-3)
A 		1.1
(-0.5)
A 		2
(2.6)
A 		2
B 0.4
(-2.9)
A 		1.8
(-1.1)
A 		0.3
(-3)
A 		0.4
(-2.9)
A 		5.1
(3)
A 		1.3
(-1.8)
A 		5
C 0.8
(-1.8)
A 		1.5
(2.4)
A 		1.5
(2.4)
A 		0.6
(-3)
A 		1.6
(3)
A 		0.8
(-1.8)
A 		1
avr 0.6
(-2.7) 		1.8
(0.7) 		1.1
(-1.3) 		0.5
(-3) 		2.6
(3) 		1.4
(-0.4) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181389_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1953
Sequence Type Exemplar sequence
Representative Public ID T15D6.11 NCBI
Target Description T15D6.11 /REP_DB=WormBase Gene ID /WP=CE13700 /TR=O02318 /GB=CAB05624.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060741(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060741 NCBI Caenorhabditis elegans T15D6.11 (T15D6.11) mRNA, complete cds. 11/11 None
SNAP00000012748 ENSEMBL cdna:SNAP chromosome:CEL140:I:12404765:12406087:-1 11/11 None
GENEFINDER00000012756 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12404765:12406377:-1 11/11 None
T15D6.11 ENSEMBL cdna:known chromosome:CEL140:I:12404765:12406413:-1 gene:T15D6.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12404695-12406344(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T15D6.11
Entrez Gene 188537 Entrez gene
SwissProt O02318 EMBL-EBI
WormBase CE13700 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05624 Hypothetical protein T15D6.11 [Caenorhabditis elegans] ref|NP_493142.1| T15D6.11 [Caenorhabditis elegans] 0.0
blast CAB05618 Hypothetical protein T15D6.8 [Caenorhabditis elegans] ref|NP_493139.1| T15D6.8 [Caenorhabditis elegans] 1.0E-151
blast CAB05624 Hypothetical protein T15D6.11 [Caenorhabditis elegans] ref|NP_493142.1| T15D6.11 [Caenorhabditis elegans] 1.0E-147
blast CAE69125 Hypothetical protein CBG15151 [Caenorhabditis briggsae] 1.0E-131
Protein Domains
Database ID Description E-Value
Pfam IPR002485 EMBL-EBI Protein of unknown function DUF13 2.5E-50
Pfam IPR002485 EMBL-EBI Protein of unknown function DUF13 2.5E-50
Pfam IPR002485 EMBL-EBI Protein of unknown function DUF13 2.5E-50
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493142.1 1 15-32
T15D6.11 1 15-32
Sequence
Target Sequence 
>C. ELEGANS:181389_AT
gaaaccaagtggacaattcttcctaaatgtaaagaggaaaacattcttgtgacccttggc
gtcggtcatgacactattgcagaggaactgctcagcagaacacttcccaacacaacgttc
tacggagccgacccaatttatgaaccgaatcgacagctgtactcggctttcggaaagttc
ttcccatttgctattggaaaagagccgggattcacgaaattccgagtcctcccgaaccag
aatcaaaaaacaagagaatacgtttaccaggatgttactacaattccatttttgtatttt
ttgcacgacatcttaaagttaaagaaaatcgactttgcttggatagacattgaaggcggg
gagtttgaattcctcgacaaattccatcgcgacgttcaaatttgtcaattcaatatcgaa
attcattcgaaatttgcaccgacacaagctcaggcgttccatgattttatattcagagtg
ctaaaagagcagaagtatgtattcatgaaaacaatgcttaccgatgctgctggcgttcat
cgaatgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAACCAAGTGGACAATTCTTCCTA 240 359 427 Antisense
GGAAAACATTCTTGTGACCCTTGGC 426 525 462 Antisense
GGCGTCGGTCATGACACTATTGCAG 71 541 484 Antisense
GAACTGCTCAGCAGAACACTTCCCA 75 349 511 Antisense
CCCAACACAACGTTCTACGGAGCCG 649 255 532 Antisense
GGAGCCGACCCAATTTATGAACCGA 708 517 550 Antisense
CGAATCGACAGCTGTACTCGGCTTT 544 253 572 Antisense
TCGGCTTTCGGAAAGTTCTTCCCAT 2 605 589 Antisense
AGAGCCGGGATTCACGAAATTCCGA 364 1 627 Antisense
AAAACAATGCTTACCGATGCTGCTG 199 131 934 Antisense
GATGCTGCTGGCGTTCATCGAATGT 128 415 949 Antisense
Sequence Source Affymetrix Proprietary Database