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[181388_at] 7TM receptor, srx family

Description C47A10.8 /REP_DB=WormBase Gene ID /WP=CE15720 /TR=O45309 /GB=CAB03972.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 19      4grp_total > 04      6grp_cgc > 01      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 77.1
(-1.3)
P 		54
(-3)
P 		71.3
(-1.8)
M 		137.2
(3)
P 		83
B 54.4
(-3)
A 		85
(2.8)
P 		71.1
(0.1)
A 		86.3
(3)
P 		32
C 103.1
(2.6)
P 		49.3
(-3)
A 		52.3
(-2.7)
A 		106.5
(3)
P 		57
avr 78.2
(-1) 		62.8
(-3) 		64.9
(-2.7) 		110
(3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 55
(1.5)
A 		21.8
(-3)
A 		66.3
(3)
M 		45.5
(0.2)
A 		46.7
(0.4)
A 		50.2
(0.8)
A 		45
B 56.4
(3)
A 		53.9
(2.4)
M 		34.2
(-2.5)
A 		39.9
(-1.1)
P 		53.6
(2.3)
P 		32.2
(-3)
A 		24
C 49
(0.7)
A 		34.6
(-1.8)
A 		31.2
(-2.4)
A 		56.5
(1.9)
A 		62.9
(3)
P 		27.4
(-3)
A 		36
avr 53.5
(2.7) 		36.8
(-2.9) 		43.9
(-0.5) 		47.3
(0.6) 		54.4
(3) 		36.6
(-3) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 28.1
(3)
P 		11.7
(-3)
P 		18.6
(-0.5)
M 		20.1
(0.1)
P 		16
B 17.4
(-1.8)
A 		21
(3)
P 		16.5
(-3)
A 		18.4
(-0.5)
P 		5
C 34.1
(3)
P 		14.2
(-3)
A 		18.2
(-1.8)
A 		18
(-1.9)
P 		20
avr 26.5
(3) 		15.6
(-3) 		17.8
(-1.8) 		18.8
(-1.2) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 10.1
(-0.9)
A 		7.7
(-3)
A 		14.4
(3)
M 		11.5
(0.4)
A 		14.1
(2.7)
A 		12.2
(1)
A 		7
B 19.6
(2)
A 		17.9
(1.3)
M 		8.3
(-3)
A 		10.6
(-2)
P 		21.8
(3)
P 		12
(-1.4)
A 		14
C 18.2
(2)
A 		10.5
(-1.7)
A 		7.9
(-3)
A 		11.4
(-1.3)
A 		20.3
(3)
P 		9.2
(-2.4)
A 		12
avr 16
(1.1) 		12
(-1.7) 		10.2
(-3) 		11.2
(-2.3) 		18.7
(3) 		11.1
(-2.4) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181388_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12889
Sequence Type Exemplar sequence
Representative Public ID C47A10.8 NCBI
Target Description C47A10.8 /REP_DB=WormBase Gene ID /WP=CE15720 /TR=O45309 /GB=CAB03972.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075092(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075092 NCBI Caenorhabditis elegans Serpentine Receptor, class X family member (srx-18) (srx-18) mRNA, complete cds. 11/11 None
SNAP00000022118 ENSEMBL cdna:SNAP chromosome:CEL140:V:17797485:17801465:-1 11/11 None
C47A10.8 ENSEMBL cdna:known chromosome:CEL140:V:17798776:17801465:-1 gene:C47A10.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17799573-17801395(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM receptor, srx family
Gene Symbol srx-18
Ensembl C47A10.8
Entrez Gene 183532 Entrez gene
SwissProt O45309 EMBL-EBI
WormBase CE36278 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03972 Hypothetical protein C47A10.8 [Caenorhabditis elegans] ref|NP_507493.2| Serpentine Receptor, class X family member (srx-18) [Caenorhabditis elegans] 1.0E-143
blast CAB03972 Hypothetical protein C47A10.8 [Caenorhabditis elegans] ref|NP_507493.2| Serpentine Receptor, class X family member (srx-18) [Caenorhabditis elegans] 1.0E-128
blast CAE11296 Hypothetical protein C47A10.7 [Caenorhabditis elegans] ref|NP_001023714.1| Serpentine Receptor, class H family member (srh-288) [Caenorhabditis elegans] 1.0E-110
blast T20675 hypothetical protein F55B12.8 - Caenorhabditis elegans 1.0E-96
blast T20675 hypothetical protein F55B12.8 - Caenorhabditis elegans 2.0E-96
blast CAE66221 Hypothetical protein CBG11463 [Caenorhabditis briggsae] 2.0E-92
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 8.7E-63
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 3.3E-15
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507493.2 7 5-27,48-67,89-111,124-146,166-188,217-239,249-271
C47A10.8 7 5-27,48-67,89-111,124-146,166-188,217-239,249-271
SNAP00000022118 11 5-27,48-67,89-111,124-146,166-188,235-257,272-294,307-329,349-371,392-414,427-449
Sequence
Target Sequence 
>C. ELEGANS:181388_AT
ttctgttgtatgtctgtccaatgcaatttagcgattccaccattttcatccaatattccc
atatactcggagcttccgcaatggcagcctatgaaatttctcatttgtctcatcttctaa
ctgcactcaatcgattttgtgctgtattcttcccattttactacgaaaaactattttcga
aaattggaacaattataatgattcaagcgatttggattgtttcaatcatattttgtgttt
tattttatgaaattattggttgcttattcacatatgatgacgtcacatggacatttggat
ttctgacaactcaaaaatgcagtcaactgacatggtatacagatttcattttgaatactg
taatgataattgtgacaatagtagtcaacctgctcacagctttcaaagcaggaaaaaaca
gtcgatctttgatgaatgcagccggcatccaaatgtcaaggagacagaaacaacgggaac
tgggatttattaaacaaacatttcttcaaggaattagtatgtttgctggtcaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTGTTGTATGTCTGTCCAATGCA 91 695 155 Antisense
GCAATTTAGCGATTCCACCATTTTC 333 323 177 Antisense
CACCATTTTCATCCAATATTCCCAT 143 201 192 Antisense
AGCTTCCGCAATGGCAGCCTATGAA 689 77 225 Antisense
TCATCTTCTAACTGCACTCAATCGA 318 621 264 Antisense
TGCTGTATTCTTCCCATTTTACTAC 509 577 294 Antisense
GATGACGTCACATGGACATTTGGAT 510 409 430 Antisense
GACATTTGGATTTCTGACAACTCAA 127 371 444 Antisense
AATAGTAGTCAACCTGCTCACAGCT 323 173 531 Antisense
GAATGCAGCCGGCATCCAAATGTCA 547 329 588 Antisense
GGAATTAGTATGTTTGCTGGTCAAT 508 533 664 Antisense
Sequence Source Affymetrix Proprietary Database