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[181387_at]

Description T27F7.1 /REP_DB=WormBase Gene ID /WP=CE27211 /TR=Q9GYK4 /GB=AAG01563.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 88      6grp_high1_10_10 > 98      4grp_highest_8_8 > 30      4grp_high_8_8 > 05      6grp_highest_nonorm > 94      6grp_total > 97      4grp_total > 04      6grp_highest_sub > Da      6grp_high1_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 507
1 2 3 4 range
A 441.2
(-1.7)
P 		428.1
(-1.9)
P 		348.5
(-3)
P 		789.4
(3)
P 		441
B 502.4
(-1.9)
P 		422.7
(-3)
P 		479.9
(-2.2)
P 		855.2
(3)
P 		433
C 532.5
(-0.7)
P 		370.6
(-2.8)
P 		357.3
(-3)
P 		808.5
(3)
P 		451
avr 492
(-1.6) 		407.1
(-2.8) 		395.2
(-3) 		817.7
(3) 		423

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 468
1 2 3 4 5 6 range
A 529.1
(-0.2)
P 		382
(-3)
P 		609.2
(1.4)
P 		677.3
(2.7)
P 		606.8
(1.3)
P 		692.6
(3)
P 		311
B 468.3
(-2.1)
P 		404.9
(-3)
P 		457.7
(-2.3)
P 		467
(-2.2)
P 		719.7
(1.2)
P 		849.5
(3)
P 		445
C 475.5
(-2.8)
P 		465.3
(-3)
P 		475.6
(-2.8)
P 		492
(-2.5)
P 		642.2
(0.4)
P 		782.1
(3)
P 		317
avr 491
(-1.8) 		417.4
(-3) 		514.2
(-1.4) 		545.4
(-0.9) 		656.2
(1) 		774.7
(3) 		357
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 160.6
(3)
P 		92.9
(-2.8)
P 		91.1
(-3)
P 		115.5
(-0.9)
P 		70
B 160.2
(1.3)
P 		104.4
(-3)
P 		111.2
(-2.5)
P 		182.2
(3)
P 		78
C 176.3
(3)
P 		106.5
(-3)
P 		124.5
(-1.5)
P 		136.3
(-0.4)
P 		70
avr 165.7
(3) 		101.3
(-3) 		108.9
(-2.3) 		144.7
(1) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 219
1 2 3 4 5 6 range
A 97.5
(-3)
P 		135.9
(-0.3)
P 		132.7
(-0.5)
P 		171.8
(2.2)
P 		183.1
(3)
P 		168.6
(2)
P 		86
B 162.9
(-1.5)
P 		134.8
(-2.3)
P 		111.1
(-3)
P 		123.7
(-2.6)
P 		292.4
(2.3)
P 		316.8
(3)
P 		206
C 176.2
(-0.2)
P 		142
(-1.4)
P 		121.1
(-2.2)
P 		98.9
(-3)
P 		207.8
(1)
P 		261.8
(3)
P 		163
avr 145.5
(-1.9) 		137.6
(-2.2) 		121.6
(-3) 		131.5
(-2.5) 		227.8
(2) 		249.1
(3) 		128
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181387_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5704
Sequence Type Exemplar sequence
Representative Public ID T27F7.1 NCBI
Target Description T27F7.1 /REP_DB=WormBase Gene ID /WP=CE27211 /TR=Q9GYK4 /GB=AAG01563.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062518(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062518 NCBI Caenorhabditis elegans T27F7.1 (T27F7.1) mRNA, complete cds. 11/11 None
T27F7.1.2 ENSEMBL cdna:known chromosome:CEL140:II:4994072:4995528:1 gene:T27F7.1 11/11 None
T27F7.1.1 ENSEMBL cdna:known chromosome:CEL140:II:4994202:4995528:1 gene:T27F7.1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000007642 4/11 Cross Hyb Matching Probes None
GENEFINDER00000007660 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4994145-4995459(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T27F7.1
Entrez Gene 173863 Entrez gene
SwissProt Q9GYK4 EMBL-EBI
WormBase CE27211 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:249863_AT SNF7 family protein at
CANINE:1604315_AT similar to vacuolar protein sorting 24 isoform 1 cfa
CANINE:1601227_AT similar to vacuolar protein sorting 24 isoform 1 cfa
CANINE:1586715_AT similar to vacuolar protein sorting 24 isoform 1 cfa
CANINE_2:CFA.12683.1.S1_AT similar to vacuolar protein sorting 24 isoform 1 cfa
CANINE_2:CFA.12683.2.S1_AT similar to vacuolar protein sorting 24 isoform 1 cfa
CANINE_2:CFAAFFX.12087.1.S1_S_AT similar to vacuolar protein sorting 24 isoform 1 cfa
DROSOPHILA_2:1625824_AT dm
DROSGENOME1:152590_AT dm
CHICKEN:GGA.12935.1.S1_AT vacuolar protein sorting 24 (yeast) gga
CHICKEN:GGA.18955.1.S1_AT vacuolar protein sorting 24 (yeast) gga
HG-U133B:222437_S_AT vacuolar protein sorting 24 (yeast) hs
HG-U133_PLUS_2:222437_S_AT vacuolar protein sorting 24 (yeast) hs
HU35KSUBA:AA134178_S_AT vacuolar protein sorting 24 (yeast) hs
HU35KSUBA:RC_AA232208_AT vacuolar protein sorting 24 (yeast) hs
HG-U133A:217837_S_AT vacuolar protein sorting 24 (yeast) hs
HG-U133_PLUS_2:217837_S_AT vacuolar protein sorting 24 (yeast) hs
HG-U133A_2:217837_S_AT vacuolar protein sorting 24 (yeast) hs
U133_X3P:G7706352_3P_X_AT vacuolar protein sorting 24 (yeast) hs
U133_X3P:G7706352_3P_A_AT vacuolar protein sorting 24 (yeast) hs
U133_X3P:G13325201_3P_A_AT vacuolar protein sorting 24 (yeast) hs
U133_X3P:HS.189658.0.S1_3P_A_AT vacuolar protein sorting 24 (yeast) hs
HG-U133_PLUS_2:222436_S_AT vacuolar protein sorting 24 (yeast) hs
HG-U133B:222436_S_AT vacuolar protein sorting 24 (yeast) hs
HG-U95B:49383_AT vacuolar protein sorting 24 (yeast) hs
HG-U95C:65755_AT vacuolar protein sorting 24 (yeast) hs
HG-U95D:84208_AT Vacuolar protein sorting 24 (yeast) hs
MOUSE430_2:1459584_AT vacuolar protein sorting 24 (yeast) mm
MOE430B:1459584_AT vacuolar protein sorting 24 (yeast) mm
MU11KSUBA:AA123450_AT vacuolar protein sorting 24 (yeast) mm
MG-U74AV2:96002_AT vacuolar protein sorting 24 (yeast) mm
MOE430A:1428165_AT vacuolar protein sorting 24 (yeast) mm
MOUSE430A_2:1428165_AT vacuolar protein sorting 24 (yeast) mm
MOUSE430_2:1428165_AT vacuolar protein sorting 24 (yeast) mm
MOE430A:1453564_A_AT vacuolar protein sorting 24 (yeast) mm
MOUSE430A_2:1453564_A_AT vacuolar protein sorting 24 (yeast) mm
MOUSE430_2:1453564_A_AT vacuolar protein sorting 24 (yeast) mm
MOUSE430_2:1447062_AT Vacuolar protein sorting 24 (yeast) (Vps24), mRNA mm
MOE430B:1447062_AT Vacuolar protein sorting 24 (yeast) (Vps24), mRNA mm
MU19KSUBA:TC25090_AT Vacuolar protein sorting 24 (yeast) (Vps24), mRNA mm
MU19KSUBB:TC34060_AT Vacuolar protein sorting 24 (yeast) (Vps24), mRNA mm
MU19KSUBC:TC38290_AT Vacuolar protein sorting 24 (yeast) (Vps24), mRNA mm
Protein Similarities
Method ID Description E-Value
blast NP_494919 T27F7.1 [Caenorhabditis elegans] gb|AAG01563.2| Hypothetical protein T27F7.1 [Caenorhabditis elegans] 1.0E-109
blast CAE59018 Hypothetical protein CBG02295 [Caenorhabditis briggsae] 1.0E-105
blast T16946 hypothetical protein T27F7.1 - Caenorhabditis elegans 3.0E-78
Protein Domains
Database ID Description E-Value
Pfam IPR005024 EMBL-EBI Snf7 6.4E-38
Sequence
Target Sequence 
>C. ELEGANS:181387_AT
agaggttcgagagcttcaacgcaaaatgcgacaagagatgcggtcgttggaccgtcaagt
ttattcgatccaacgtgaagaacagaaagtaacaaaagaaattaaggaagctgctaagaa
gggagataaagatgtatgcctaattctggcaaaatcgatgattcaatcaagaaaggccat
cagtaaaatccatgtttcaaaagctcaaatcaactcggttatcatgtgcatgcaggagca
acttgcaacaataagaatggctggatctctacaaaaatcaacggaagtaatgaagagtat
gcagcaacttgttcccgaaatcatgaaaacgatgcgagagatgtctgcagaaatgatgaa
acttggaattatcgaagaaatgatcgaagaaacattggagagtgtcgaaccagctggtct
agaagaaaaggctcaagaagaagtggagaatatcctctgggaagtgactcaaggagaact
tggaaaagctcctctcgcagtcaaatcgaatatcggaggagttgttactcctgcggtgga
aga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAGGTTCGAGAGCTTCAACGCAAA 40 69 105 Antisense
GAGATGCGGTCGTTGGACCGTCAAG 451 395 139 Antisense
GACCGTCAAGTTTATTCGATCCAAC 663 381 154 Antisense
GGCCATCAGTAAAATCCATGTTTCA 383 543 279 Antisense
TCATGTGCATGCAGGAGCAACTTGC 193 623 326 Antisense
GTATGCAGCAACTTGTTCCCGAAAT 642 455 401 Antisense
GGAGAGTGTCGAACCAGCTGGTCTA 148 517 501 Antisense
GAATATCCTCTGGGAAGTGACTCAA 220 327 552 Antisense
AACTTGGAAAAGCTCCTCTCGCAGT 9 139 581 Antisense
GCTCCTCTCGCAGTCAAATCGAATA 259 299 592 Antisense
GAGTTGTTACTCCTGCGGTGGAAGA 363 397 623 Antisense
Sequence Source Affymetrix Proprietary Database