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[181386_at] G-protein coupled receptor, srh family

Description Y61B8A.1 /REP_DB=WormBase Gene ID /WP=CE16666 /TR=O45965 /GB=CAA16414.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 03      4grp_total > 18      6grp_cgc > 25      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 3.8
(-2.6)
A 		3
(-3)
A 		6.1
(-1.5)
A 		15.4
(3)
A 		12
B 3.4
(-3)
A 		19.1
(2.3)
A 		5.8
(-2.2)
A 		21.1
(3)
A 		18
C 3.5
(-2.8)
A 		14
(-1.3)
A 		2.4
(-3)
A 		42.5
(3)
A 		40
avr 3.6
(-3) 		12
(-0.8) 		4.8
(-2.7) 		26.3
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 21.7
(2.3)
A 		4.3
(-2.6)
A 		2.7
(-3)
A 		14.1
(0.2)
A 		3.4
(-2.8)
A 		24.3
(3)
A 		22
B 18.1
(3)
A 		10.2
(0.1)
A 		1.9
(-3)
A 		5.2
(-1.7)
A 		2.6
(-2.7)
A 		1.8
(-3)
A 		16
C 1.4
(-3)
A 		23.4
(3)
A 		12.7
(0.1)
A 		21.6
(2.5)
A 		8.7
(-1)
A 		1.9
(-2.9)
A 		22
avr 13.7
(3) 		12.6
(2.3) 		5.8
(-2.4) 		13.6
(2.9) 		4.9
(-3) 		9.3
(0) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 1.4
(-0.2)
A 		0.6
(-3)
A 		1.6
(0.5)
A 		2.3
(3)
A 		2
B 1.1
(-3)
A 		4.7
(3)
A 		1.4
(-2.5)
A 		4.5
(2.7)
A 		4
C 1.1
(-2.7)
A 		4
(0)
A 		0.8
(-3)
A 		7.2
(3)
A 		6
avr 1.2
(-3) 		3.1
(0.3) 		1.3
(-2.8) 		4.7
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 4
(0.8)
A 		1.5
(-2)
A 		0.6
(-3)
A 		3.6
(0.4)
A 		1
(-2.5)
A 		5.9
(3)
A 		5
B 6.3
(3)
A 		3.4
(0)
A 		0.5
(-3)
A 		1.4
(-2.1)
A 		1.1
(-2.4)
A 		0.7
(-2.8)
A 		6
C 0.5
(-3)
A 		7.1
(3)
A 		3.2
(-0.5)
A 		4.3
(0.5)
A 		2.8
(-0.9)
A 		0.6
(-2.9)
A 		7
avr 3.6
(2.1) 		4
(3) 		1.4
(-3) 		3.1
(0.9) 		1.6
(-2.5) 		2.4
(-0.7) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181386_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14303
Sequence Type Exemplar sequence
Representative Public ID Y61B8A.1 NCBI
Target Description Y61B8A.1 /REP_DB=WormBase Gene ID /WP=CE16666 /TR=O45965 /GB=CAA16414.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074970(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074970 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-116) (srh-116) mRNA, complete cds. 11/11 None
GENEFINDER00000011340 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17255508:17257705:-1 11/11 None
Y61B8A.1 ENSEMBL cdna:known chromosome:CEL140:V:17255508:17257705:-1 gene:Y61B8A.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000011337 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17255611-17257705(-) 100.0 100.0
Public Domain and Genome References
Gene Title G-protein coupled receptor, srh family
Gene Symbol srh-116
Ensembl Y61B8A.1
Entrez Gene 190448 Entrez gene
SwissProt O45965 EMBL-EBI
WormBase CE33237 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA16414 Hypothetical protein Y61B8A.1 [Caenorhabditis elegans] ref|NP_507371.2| Serpentine Receptor, class H family member (srh-116) [Caenorhabditis elegans] 0.0
blast CAA16415 Hypothetical protein Y61B8A.2 [Caenorhabditis elegans] ref|NP_507372.2| Serpentine Receptor, class H family member (srh-115) [Caenorhabditis elegans] 1.0E-148
blast CAA16415 Hypothetical protein Y61B8A.2 [Caenorhabditis elegans] ref|NP_507372.2| Serpentine Receptor, class H family member (srh-115) [Caenorhabditis elegans] 1.0E-147
blast CAB04557 Hypothetical protein K03D7.6 [Caenorhabditis elegans] ref|NP_507433.1| Serpentine Receptor, class H family member (srh-118) [Caenorhabditis elegans] 1.0E-129
blast CAB04557 Hypothetical protein K03D7.6 [Caenorhabditis elegans] ref|NP_507433.1| Serpentine Receptor, class H family member (srh-118) [Caenorhabditis elegans] 1.0E-128
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.1E-78
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507371.2 7 31-53,66-88,108-130,151-168,212-234,255-277,287-309
Y61B8A.1 7 31-53,66-88,108-130,151-168,212-234,255-277,287-309
GENEFINDER00000011340 10 31-53,68-90,97-119,211-233,246-268,288-310,331-348,392-414,435-457,467-489
Sequence
Target Sequence 
>C. ELEGANS:181386_AT
tactcactattttttattccatggatgttgacaacttattttgaaaagttgatacccgaa
gatcaagatgctgcaaggcaatttgcattaacattacatccatgtccaacaagagagttt
ttcacatctgaagtcttgattattcttgctgataacattctgatagaacgttttatttgg
atttttcccatttttggtgtctatttcgcaagttttccactgtttcaagtttcgactctt
atctactacatttgcattgcaccttcaaacacaatttcaaaagatactcaacagaggcaa
aaagtgtttctcttctgcattttattccaaatttttattcctctaattgccgtgctccca
gcaggttgggttttcattgtctatttgaccggtcgttattatcagacgatgatgaatgtt
acattttgtagccttggacttcacggtctcgccgagagtat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACTCACTATTTTTTATTCCATGGA 111 647 1099 Antisense
GCATTAACATTACATCCATGTCCAA 459 307 1183 Antisense
GAAGTCTTGATTATTCTTGCTGATA 169 337 1228 Antisense
TCCCATTTTTGGTGTCTATTTCGCA 559 597 1284 Antisense
ATTTCGCAAGTTTTCCACTGTTTCA 442 17 1301 Antisense
TCAAGTTTCGACTCTTATCTACTAC 245 623 1323 Antisense
CGTGCTCCCAGCAGGTTGGGTTTTC 25 243 1449 Antisense
GGGTTTTCATTGTCTATTTGACCGG 374 495 1466 Antisense
TTTGACCGGTCGTTATTATCAGACG 613 665 1482 Antisense
GTTACATTTTGTAGCCTTGGACTTC 560 445 1516 Antisense
GACTTCACGGTCTCGCCGAGAGTAT 705 371 1535 Antisense
Sequence Source Affymetrix Proprietary Database