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[181385_at] 7TM chemoreceptor, srw family

Description T11F1.1 /REP_DB=WormBase Gene ID /WP=CE20052 /TR=Q9U8C4 /GB=AAC68708.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 14      4grp_total > 04      6grp_cgc > 30      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 138
1 2 3 4 range
A 48.8
(-1)
A 		36.9
(-1.5)
A 		3.3
(-3)
A 		140.3
(3)
A 		137
B 54.4
(-1.6)
A 		46.6
(-3)
A 		79.1
(3)
A 		49.8
(-2.4)
A 		33
C 39.1
(-0.8)
A 		2.6
(-3)
A 		21
(-1.9)
A 		100.4
(3)
A 		98
avr 47.4
(-1.4) 		28.7
(-3) 		34.5
(-2.5) 		96.8
(3) 		68

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 22.7
(-1.4)
A 		21.7
(-1.5)
A 		50.8
(3)
A 		49.7
(2.8)
A 		12.3
(-3)
A 		18.7
(-2)
A 		39
B 55
(3)
A 		26.7
(-0.6)
A 		10.7
(-2.7)
A 		12.4
(-2.5)
A 		12.4
(-2.5)
A 		8.3
(-3)
A 		47
C 26.6
(0.5)
A 		44.1
(3)
A 		1.9
(-3)
A 		11.6
(-1.6)
A 		10.2
(-1.8)
A 		9.7
(-1.9)
A 		42
avr 34.8
(3) 		30.8
(2) 		21.1
(-0.5) 		24.6
(0.4) 		11.6
(-3) 		12.2
(-2.8) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 17.8
(2.2)
A 		8
(-0.8)
A 		0.9
(-3)
A 		20.5
(3)
A 		20
B 17.4
(2.3)
A 		11.5
(-2.3)
A 		18.3
(3)
A 		10.6
(-3)
A 		8
C 13
(1.6)
A 		0.7
(-3)
A 		7.3
(-0.6)
A 		16.9
(3)
A 		16
avr 16.1
(3) 		6.7
(-3) 		8.8
(-1.7) 		16
(2.9) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 4.2
(-2.7)
A 		7.7
(-0.3)
A 		11.1
(2)
A 		12.6
(3)
A 		3.7
(-3)
A 		4.6
(-2.4)
A 		9
B 19.2
(3)
A 		8.9
(-0.7)
A 		2.6
(-3)
A 		3.3
(-2.7)
A 		5
(-2.1)
A 		3.1
(-2.8)
A 		17
C 9.9
(1.4)
A 		13.4
(3)
A 		0.5
(-3)
A 		2.3
(-2.2)
A 		3.3
(-1.7)
A 		3.3
(-1.7)
A 		13
avr 11.1
(3) 		10
(2.1) 		4.7
(-2.2) 		6.1
(-1.1) 		4
(-2.8) 		3.7
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181385_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5405
Sequence Type Exemplar sequence
Representative Public ID T11F1.1 NCBI
Target Description T11F1.1 /REP_DB=WormBase Gene ID /WP=CE20052 /TR=Q9U8C4 /GB=AAC68708.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062011(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062011 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-60) (srw-60) mRNA, complete cds. 11/11 None
GENEFINDER00000009459 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2955477:2962388:1 11/11 None
T11F1.1 ENSEMBL cdna:known chromosome:CEL140:II:2958603:2961878:1 gene:T11F1.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000009451 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2958601-2961773(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
Gene Symbol srw-60
Ensembl T11F1.1
Entrez Gene 188409 Entrez gene
SwissProt Q9U8C4 EMBL-EBI
WormBase CE33828 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC68708 Serpentine receptor, class w protein 60 [Caenorhabditis elegans] ref|NP_494412.2| Serpentine Receptor, class W family member (srw-60) [Caenorhabditis elegans] 0.0
blast AAC68709 Hypothetical protein T11F1.2 [Caenorhabditis elegans] ref|NP_494411.1| T11F1.2 [Caenorhabditis elegans] 0.0
blast AAC68708 Serpentine receptor, class w protein 60 [Caenorhabditis elegans] ref|NP_494412.2| Serpentine Receptor, class W family member (srw-60) [Caenorhabditis elegans] 1.0E-130
blast AAF40000 Hypothetical protein ZK355.6 [Caenorhabditis elegans] ref|NP_494405.1| ZK355.6 [Caenorhabditis elegans] 1.0E-111
blast CAB63232 Hypothetical protein H25K10.7 [Caenorhabditis elegans] ref|NP_502926.1| Serpentine Receptor, class W family member (srw-61) [Caenorhabditis elegans] 4.0E-63
blast CAA19493 Hypothetical protein Y37A1B.10 [Caenorhabditis elegans] ref|NP_502686.2| Serpentine Receptor, class W family member (srw-63) [Caenorhabditis elegans] 1.0E-60
Protein Domains
Database ID Description E-Value
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 7.5E-32
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 9.9E-15
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494412.2 7 40-59,66-88,125-142,163-180,235-252,280-302,317-334
T11F1.1 7 40-59,66-88,125-142,163-180,235-252,280-302,317-334
GENEFINDER00000009459 3 657-674,702-724,739-756
Sequence
Target Sequence 
>C. ELEGANS:181385_AT
aaaatcctcatttgccctgaaaactaacattggagtacttatactaagtaccattataac
ctcgctcacttattcgcagaaggaagttaaagatgttggttttgaagttatatcgacgtg
ctggtttttagaaaaaaattacaaaattgcacatacctatagtgtagggagaagtgaatt
tatggacaagaatttgaattttgttgaggaatatgcttttatgtcggacggaattccaaa
gatgatcgccgcgttctttctcccaatcttggcaatagctctggtcagacgtctgcggca
agcggctgaatcaaggaagcacctgtcaaacagtaaaccactacaaactgataaatccat
tcgtatggtcacttttatgaccctattctctgtatttgccgagggaccaatgggcatttt
ctcttttattcggtcattctacttgcggttctcatcgatagaagcaagtgtggaaagcct
tgataaaatgcttatcaacttagtgatagtcaacgtcatcgcccattgttttattagtat
gcaaatgtcgtcacagtacagggatatcgcaacgcagctgtttttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAATCCTCATTTGCCCTGAAAACT 621 131 474 Antisense
TAAGTACCATTATAACCTCGCTCAC 574 637 518 Antisense
ACCTCGCTCACTTATTCGCAGAAGG 133 89 532 Antisense
CAAAGATGATCGCCGCGTTCTTTCT 70 193 710 Antisense
GTTCTTTCTCCCAATCTTGGCAATA 294 443 726 Antisense
AATAGCTCTGGTCAGACGTCTGCGG 119 173 747 Antisense
TTATGACCCTATTCTCTGTATTTGC 286 681 848 Antisense
GCATTTTCTCTTTTATTCGGTCATT 160 309 887 Antisense
TCATTCTACTTGCGGTTCTCATCGA 178 619 907 Antisense
CAACGTCATCGCCCATTGTTTTATT 521 187 984 Antisense
GGATATCGCAACGCAGCTGTTTTTG 178 511 1035 Antisense
Sequence Source Affymetrix Proprietary Database