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[181384_at]

Description C54E10.1 /REP_DB=WormBase Gene ID /WP=CE15730 /TR=O45312 /GB=CAB03996.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 03      4grp_total > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 3.4
(-0.6)
A 		2.8
(-1.3)
A 		1.5
(-3)
A 		6.2
(3)
A 		5
B 3
(-3)
A 		4.1
(-2.7)
A 		5.4
(-2.4)
A 		25.4
(3)
A 		22
C 4.9
(2)
A 		2.4
(-3)
A 		2.9
(-2)
A 		5.4
(3)
A 		3
avr 3.8
(-2.5) 		3.1
(-3) 		3.3
(-2.9) 		12.3
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 26.2
(3)
A 		22.7
(2.1)
A 		4
(-2.5)
A 		1.9
(-3)
A 		5.5
(-2.1)
A 		3
(-2.7)
A 		24
B 2.2
(-2.8)
A 		5.7
(-2)
A 		1.6
(-2.9)
A 		28.3
(3)
A 		2.2
(-2.8)
A 		1.3
(-3)
A 		27
C 4.2
(1.1)
A 		5.5
(3)
A 		3.3
(-0.1)
A 		2
(-2)
A 		1.3
(-3)
A 		1.9
(-2.1)
A 		4
avr 10.9
(2.7) 		11.3
(3) 		3
(-2.4) 		10.7
(2.6) 		3
(-2.4) 		2.1
(-3) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 1.2
(3)
A 		0.6
(-1.5)
A 		0.4
(-3)
A 		0.9
(0.8)
A 		1
B 1
(-3)
A 		1
(-3)
A 		1.2
(-2.7)
A 		5.4
(3)
A 		4
C 1.6
(3)
A 		0.7
(-3)
A 		1
(-1)
A 		0.9
(-1.7)
A 		1
avr 1.3
(-1.1) 		0.8
(-3) 		0.9
(-2.6) 		2.4
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 4.8
(0.4)
A 		8.1
(3)
A 		0.9
(-2.7)
A 		0.5
(-3)
A 		1.7
(-2.1)
A 		0.7
(-2.8)
A 		8
B 0.8
(-2.7)
A 		1.9
(-1.7)
A 		0.4
(-3)
A 		7.5
(3)
A 		0.9
(-2.6)
A 		0.5
(-2.9)
A 		7
C 1.6
(2.5)
A 		1.7
(3)
A 		0.9
(-0.7)
A 		0.4
(-3)
A 		0.4
(-3)
A 		0.7
(-1.6)
A 		1
avr 2.4
(0.3) 		3.9
(3) 		0.7
(-2.8) 		2.8
(1) 		1
(-2.3) 		0.6
(-3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181384_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12850
Sequence Type Exemplar sequence
Representative Public ID C54E10.1 NCBI
Target Description C54E10.1 /REP_DB=WormBase Gene ID /WP=CE15730 /TR=O45312 /GB=CAB03996.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075276(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075276 NCBI Caenorhabditis elegans C54E10.1 (C54E10.1) mRNA, complete cds. 11/11 None
SNAP00000040258 ENSEMBL cdna:SNAP chromosome:CEL140:V:18817609:18831594:1 11/11 None
GENEFINDER00000040265 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18817609:18821166:1 10/11 None
C54E10.1 ENSEMBL cdna:known chromosome:CEL140:V:18817609:18821166:1 gene:C54E10.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18817608-18821005(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C54E10.1
Entrez Gene 183791 Entrez gene
SwissProt O45312 EMBL-EBI
WormBase CE36474 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03996 Hypothetical protein C54E10.1 [Caenorhabditis elegans] ref|NP_507677.2| C54E10.1 [Caenorhabditis elegans] 0.0
blast CAB04722 Hypothetical protein T08G5.9 [Caenorhabditis elegans] ref|NP_506488.1| T08G5.9 [Caenorhabditis elegans] 3.0E-92
blast CAB04721 Hypothetical protein T08G5.8 [Caenorhabditis elegans] ref|NP_506489.1| T08G5.8 [Caenorhabditis elegans] 1.0E-89
blast CAB04722 Hypothetical protein T08G5.9 [Caenorhabditis elegans] ref|NP_506488.1| T08G5.9 [Caenorhabditis elegans] 2.0E-87
blast CAB04721 Hypothetical protein T08G5.8 [Caenorhabditis elegans] ref|NP_506489.1| T08G5.8 [Caenorhabditis elegans] 1.0E-84
Protein Domains
Database ID Description E-Value
Pfam IPR000535 EMBL-EBI Major sperm protein (MSP) domain 3.4E-5
Pfam IPR000535 EMBL-EBI Major sperm protein (MSP) domain 3.4E-5
Sequence
Target Sequence 
>C. ELEGANS:181384_AT
tccctccttgggattcacacaagtccgacaagttcttctatgccgcaggcaatttattct
aatgatagtctcaacacgactgatggactgtttggagatgaatctctcaatagtgaaacc
agcattgtcagcttcaccggagaaaatgcggtgagccagtgtcgtcgatcttctcgtttg
agaaacaagcaagagagacaaagtctattggaatcaactgtaaatattattcctgagcct
gtttttttaagaagcaatgtaacatctttgacaacaagcgaatcagatgatattcaacag
tttttccttgaaaacgagtcgctattccaaattgaatacaaaatcgattacaaaaactac
agagactacactattgtgccctctttcggaactgttttaccgaagagtaaatgcgaaatc
gctttgatttgtcgacctaccggaaaatctgaatcagatcgaatgactatctgttacaaa
acagtggatagtgataatgacttggccaacggatgcttttcggag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCCTCCTTGGGATTCACACAAGTC 482 597 1981 Antisense
CACACAAGTCCGACAAGTTCTTCTA 371 195 1996 Antisense
CAAGTTCTTCTATGCCGCAGGCAAT 372 179 2009 Antisense
ATGCCGCAGGCAATTTATTCTAATG 149 41 2020 Antisense
GTCTCAACACGACTGATGGACTGTT 612 469 2048 Antisense
GATGGACTGTTTGGAGATGAATCTC 52 407 2062 Antisense
AAAATGCGGTGAGCCAGTGTCGTCG 469 131 2123 Antisense
TGTCGTCGATCTTCTCGTTTGAGAA 629 557 2140 Antisense
ATATTATTCCTGAGCCTGTTTTTTT 474 19 2204 Antisense
ATCGAATGACTATCTGTTACAAAAC 555 25 2438 Antisense
CTTGGCCAACGGATGCTTTTCGGAG 227 213 2481 Antisense
Sequence Source Affymetrix Proprietary Database