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[181383_at]

Description K09F6.1 /REP_DB=WormBase Gene ID /WP=CE12024 /TR=O16733 /GB=AAB66192.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 12      4grp_total > 01      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 3
(-3)
A 		3.7
(-2.6)
A 		7.6
(-0.7)
A 		14.9
(3)
A 		12
B 10.7
(3)
A 		2.2
(-3)
A 		5.1
(-1)
A 		3.8
(-1.9)
A 		9
C 3
(-3)
A 		2.9
(-3)
A 		4.9
(-2.6)
A 		31.3
(3)
A 		28
avr 5.6
(-1.8) 		2.9
(-3) 		5.9
(-1.7) 		16.7
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 24.5
(3)
A 		15.2
(-0)
A 		12.4
(-0.9)
A 		6.3
(-2.9)
A 		12.2
(-1)
A 		5.9
(-3)
A 		19
B 6.1
(-1.4)
A 		18.1
(3)
A 		8.9
(-0.3)
A 		1.9
(-2.9)
A 		3.7
(-2.2)
A 		1.6
(-3)
A 		17
C 1.5
(-3)
A 		6.3
(-0.5)
A 		5.6
(-0.8)
A 		12.8
(3)
A 		2.5
(-2.5)
A 		3.4
(-2)
A 		11
avr 10.7
(1.4) 		13.2
(3) 		9
(0.4) 		7
(-0.9) 		6.1
(-1.4) 		3.6
(-3) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 1.1
(-1.7)
A 		0.8
(-3)
A 		2
(2.1)
A 		2.2
(3)
A 		1
B 3.4
(3)
A 		0.5
(-3)
A 		1.2
(-1.6)
A 		0.8
(-2.4)
A 		3
C 1
(-2.7)
A 		0.8
(-3)
A 		1.7
(-1.8)
A 		5.3
(3)
A 		5
avr 1.8
(0.1) 		0.7
(-3) 		1.6
(-0.4) 		2.8
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 4.5
(1.7)
A 		5.4
(3)
A 		2.7
(-1.1)
A 		1.6
(-2.7)
A 		3.7
(0.5)
A 		1.4
(-3)
A 		4
B 2.1
(-1.3)
A 		6
(3)
A 		2.2
(-1.1)
A 		0.5
(-3)
A 		1.5
(-1.9)
A 		0.6
(-2.9)
A 		6
C 0.6
(-3)
A 		1.9
(0.9)
A 		1.4
(-0.6)
A 		2.6
(3)
A 		0.8
(-2.4)
A 		1.1
(-1.5)
A 		2
avr 2.4
(-0.5) 		4.4
(3) 		2.1
(-1.1) 		1.6
(-1.9) 		2
(-1.2) 		1
(-3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181383_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4540
Sequence Type Exemplar sequence
Representative Public ID K09F6.1 NCBI
Target Description K09F6.1 /REP_DB=WormBase Gene ID /WP=CE12024 /TR=O16733 /GB=AAB66192.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000009243 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2286398:2287453:1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000009227 8/11 Cross Hyb Matching Probes None
GENEFINDER00000022469 1/11 Cross Hyb Matching Probes None
SNAP00000022458 1/11 Cross Hyb Matching Probes None
SNAP00000003492 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2286396-2287452(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T32093 hypothetical protein K09F6.1 - Caenorhabditis elegans 0.0
blast CAB16519 Hypothetical protein Y57G11C.18 [Caenorhabditis elegans] ref|NP_502798.1| Y57G11C.18 [Caenorhabditis elegans] 1.0E-132
blast AAA28053 Hypothetical protein F54H12.4 [Caenorhabditis elegans] ref|NP_498734.1| F54H12.4 [Caenorhabditis elegans] sp|P34458|YMD4_CAEEL Hypothetical protein F54H12.4 in chromosome III 1.0E-117
Sequence
Target Sequence 
>C. ELEGANS:181383_AT
aagagcgtggtgaaagtagaagcaaaaacagaatccgatcaagagattgaagaacccgat
gaagatatgcaagctgctccaccgaggaaaccagaggaaaaaactgaggaaatcacacca
gtttcaattaaaaaacgatcgtttcagcaagacgccacaaagaatctaaacaagagacaa
aagtttgatctcaagagaggaaagagcatgaataacgtgaaaccaagaaaactttataaa
atgcagctggaagaggatgaggaagatgaagagccgatggttgatgagacgccacaaaac
actgagatttccattaaaaagagaccagttcaacaggattccacaaaaaacttaaacaag
aggcagaaatttgatttgaaaagaagaaagaatatgagtagagtgaggcctccatttttt
ttgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGAGCGTGGTGAAAGTAGAAGCAA 477 153 598 Antisense
GAAGCAAAAACAGAATCCGATCAAG 696 337 616 Antisense
GAGATTGAAGAACCCGATGAAGATA 188 395 640 Antisense
TGAAGATATGCAAGCTGCTCCACCG 451 575 657 Antisense
CTGCTCCACCGAGGAAACCAGAGGA 497 237 671 Antisense
GAGGAAATCACACCAGTTTCAATTA 212 405 703 Antisense
AACGATCGTTTCAGCAAGACGCCAC 559 143 731 Antisense
GCAAGACGCCACAAAGAATCTAAAC 214 321 744 Antisense
GATTTCCATTAAAAAGAGACCAGTT 370 423 903 Antisense
GAGTAGAGTGAGGCCTCCATTTTTT 563 397 993 Antisense
AGAGTGAGGCCTCCATTTTTTTTGT 243 67 997 Antisense
Sequence Source Affymetrix Proprietary Database