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[181382_s_at]

Description C05C8.5 /REP_DB=WormBase Gene ID /WP=CE07923 /TR=O16312 /GB=AAB65372.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 69      6grp_high1_10_10 > 95      4grp_highest_8_8 > 38      4grp_high_8_8 > 03      6grp_highest_nonorm > 93      6grp_total > 86      4grp_total > 06      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 194
1 2 3 4 range
A 259.8
(3)
P 		202.9
(-3)
P 		230.7
(-0.1)
P 		251.4
(2.1)
P 		57
B 279.7
(-1.2)
P 		228.2
(-3)
P 		297.6
(-0.5)
P 		397.2
(3)
P 		169
C 322.2
(3)
P 		294.2
(1)
P 		239
(-3)
P 		302.9
(1.6)
P 		83
avr 287.2
(0.6) 		241.8
(-3) 		255.8
(-1.9) 		317.2
(3) 		75

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 451
1 2 3 4 5 6 range
A 212.3
(-3)
P 		292
(-1.3)
P 		298.6
(-1.2)
P 		462.6
(2.2)
P 		474.9
(2.5)
P 		499.2
(3)
P 		287
B 214.9
(-3)
P 		321.7
(-1.5)
P 		381.9
(-0.6)
P 		304.5
(-1.7)
P 		517.1
(1.3)
P 		632.7
(3)
P 		418
C 181.4
(-3)
P 		306.7
(-1.1)
P 		324.4
(-0.8)
P 		462.5
(1.3)
P 		403.2
(0.4)
P 		576.8
(3)
P 		395
avr 202.9
(-3) 		306.8
(-1.3) 		335
(-0.8) 		409.9
(0.4) 		465.1
(1.3) 		569.6
(3) 		367
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 94.6
(3)
P 		44.1
(-2.2)
P 		60.3
(-0.6)
P 		36.8
(-3)
P 		58
B 89.2
(3)
P 		56.4
(-3)
P 		69
(-0.7)
P 		84.6
(2.2)
P 		33
C 106.6
(3)
P 		84.6
(0.6)
P 		83.3
(0.5)
P 		51.1
(-3)
P 		56
avr 96.8
(3) 		61.7
(-2.4) 		70.9
(-1) 		57.5
(-3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 197
1 2 3 4 5 6 range
A 39.1
(-3)
P 		103.8
(0.7)
P 		65
(-1.5)
P 		117.3
(1.5)
P 		143.3
(3)
P 		121.5
(1.7)
P 		104
B 74.8
(-3)
P 		107.1
(-1.8)
P 		92.7
(-2.3)
P 		80.7
(-2.8)
P 		210.1
(2)
P 		235.9
(3)
P 		161
C 67.2
(-3)
P 		93.6
(-1.7)
P 		82.6
(-2.3)
P 		93
(-1.8)
P 		130.5
(0)
P 		193.1
(3)
P 		126
avr 60.4
(-3) 		101.5
(-1) 		80.1
(-2) 		97
(-1.2) 		161.3
(1.9) 		183.5
(3) 		123
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181382_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11542
Sequence Type Exemplar sequence
Representative Public ID C05C8.5 NCBI
Target Description C05C8.5 /REP_DB=WormBase Gene ID /WP=CE07923 /TR=O16312 /GB=AAB65372.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072437(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072437 NCBI Caenorhabditis elegans C05C8.5 (C05C8.5) mRNA, complete cds. 11/11 None
SNAP00000024625 ENSEMBL cdna:SNAP chromosome:CEL140:V:7235330:7239719:-1 11/11 None
GENEFINDER00000024635 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7235330:7237406:-1 11/11 None
C05C8.5 ENSEMBL cdna:known chromosome:CEL140:V:7234840:7237419:-1 gene:C05C8.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7235330-7237407(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C05C8.5
Entrez Gene 179116 Entrez gene
SwissProt O16312 EMBL-EBI
WormBase CE07923 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4527 exonuclease activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB65372 Hypothetical protein C05C8.5 [Caenorhabditis elegans] ref|NP_504838.1| C05C8.5 [Caenorhabditis elegans] 0.0
blast AAB65373 Hypothetical protein C05C8.6 [Caenorhabditis elegans] ref|NP_504839.1| C05C8.6 [Caenorhabditis elegans] 0.0
blast CAE72034 Hypothetical protein CBG19116 [Caenorhabditis briggsae] 0.0
blast CAE72033 Hypothetical protein CBG19115 [Caenorhabditis briggsae] 1.0E-151
blast XP_394242 PREDICTED: similar to CG8368-PA, isoform A [Apis mellifera] 5.0E-45
Protein Domains
Database ID Description E-Value
Pfam IPR006055 EMBL-EBI Exonuclease 2.2E-43
Pfam IPR006055 EMBL-EBI Exonuclease 2.2E-43
Pfam IPR000210 EMBL-EBI BTB/POZ domain 1.8E-30
Sequence
Target Sequence 
>C. ELEGANS:181382_S_AT
attgtcacggctgctgaaatcacatcaaaaccgtgtactgattgctctcagccaacagtt
gttgcttgcacagttgccaattgcagatgcagatttgtatcgactccttcgaaatgtgtg
cattgtgtgaagatcgggataagtgcccaaggagattttcattggcaggatacacttgat
gtggatcatgaaaagaaagcatctccaatcgggaattatttgaaaaaggataaaatgaaa
tctgtgatgtgtgctttcgatactgctattctcgactgtcctcccatatcaaaaaaggtc
cgctcaaaacttcattcctcttttccctcctataatggattcgtcaacagtgtagcttct
gaaatgctcaatgacagtgtaatcctcgtggagattgacaaagaaaaaatagaaccattg
gaagaaactgattcagagcaaggagaagttcctgacaacgcggaggcactgaatcggatt
cttgaaaaactggttgccgccacggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTGTCACGGCTGCTGAAATCACAT 365 3 1222 Antisense
GTGTACTGATTGCTCTCAGCCAACA 580 485 1254 Antisense
GTTGTTGCTTGCACAGTTGCCAATT 483 437 1279 Antisense
GATGCAGATTTGTATCGACTCCTTC 467 413 1307 Antisense
CGACTCCTTCGAAATGTGTGCATTG 279 251 1322 Antisense
GTGATGTGTGCTTTCGATACTGCTA 610 483 1465 Antisense
TCGATACTGCTATTCTCGACTGTCC 277 603 1478 Antisense
TCCTCTTTTCCCTCCTATAATGGAT 286 589 1537 Antisense
GAGAAGTTCCTGACAACGCGGAGGC 149 389 1664 Antisense
ACGCGGAGGCACTGAATCGGATTCT 439 91 1679 Antisense
TTGAAAAACTGGTTGCCGCCACGGC 42 703 1703 Antisense
Sequence Source Affymetrix Proprietary Database