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[181381_at]

Description T02H6.2 /REP_DB=WormBase Gene ID /WP=CE21138 /TR=Q9N5E3 /GB=AAF39962.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 39      6grp_total > 39      4grp_total > 62      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 119.3
(0.9)
P 		137.1
(3)
A 		120.7
(1)
A 		87
(-3)
A 		50
B 120.5
(2.1)
P 		87.8
(-3)
A 		111.2
(0.7)
A 		126.1
(3)
A 		38
C 164.5
(3)
P 		115.1
(-1)
A 		134.7
(0.6)
P 		89.5
(-3)
A 		75
avr 134.8
(3) 		113.3
(-0.8) 		122.2
(0.8) 		100.9
(-3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 104
1 2 3 4 5 6 range
A 147.8
(2.1)
A 		139.2
(1.4)
P 		127.9
(0.4)
P 		88.7
(-3)
P 		111.2
(-1)
P 		157.9
(3)
P 		69
B 192.7
(3)
P 		148.3
(0.1)
P 		124.2
(-1.5)
P 		101.9
(-3)
P 		171.9
(1.6)
P 		177.6
(2)
P 		91
C 141.4
(1.7)
P 		122.4
(-0.9)
P 		107.7
(-3)
M 		128.6
(-0.1)
P 		150.3
(3)
P 		132.4
(0.5)
P 		43
avr 160.6
(3) 		136.6
(0.3) 		119.9
(-1.5) 		106.4
(-3) 		144.5
(1.2) 		156
(2.5) 		54
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 43.4
(3)
P 		29.8
(0.3)
A 		31.5
(0.7)
A 		12.7
(-3)
A 		31
B 38.4
(3)
P 		21.7
(-3)
A 		25.8
(-1.5)
A 		26.9
(-1.1)
A 		17
C 54.5
(3)
P 		33.1
(-0.3)
A 		46.9
(1.8)
P 		15.1
(-3)
A 		39
avr 45.4
(3) 		28.2
(-0.8) 		34.7
(0.6) 		18.2
(-3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 27.2
(-2)
A 		49.5
(3)
P 		27.8
(-1.8)
P 		22.5
(-3)
P 		33.5
(-0.6)
P 		38.5
(0.6)
P 		27
B 67.1
(2.6)
P 		49.4
(0.1)
P 		30.2
(-2.6)
P 		27
(-3)
P 		69.8
(3)
P 		66.2
(2.5)
P 		43
C 52.4
(3)
P 		37.4
(-0.4)
P 		27.4
(-2.7)
M 		25.9
(-3)
P 		48.6
(2.1)
P 		44.3
(1.2)
P 		27
avr 48.9
(2.6) 		45.4
(1.8) 		28.5
(-2.2) 		25.1
(-3) 		50.6
(3) 		49.7
(2.8) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181381_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5391
Sequence Type Exemplar sequence
Representative Public ID T02H6.2 NCBI
Target Description T02H6.2 /REP_DB=WormBase Gene ID /WP=CE21138 /TR=Q9N5E3 /GB=AAF39962.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061395(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061395 NCBI Caenorhabditis elegans T02H6.2 (T02H6.2) mRNA, complete cds. 11/11 None
T02H6.2 ENSEMBL cdna:known chromosome:CEL140:II:702121:708614:1 gene:T02H6.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000003372 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:702120-708614(+) 99.22 100.0
Public Domain and Genome References
Gene Title
Ensembl T02H6.2
Entrez Gene 173460 Entrez gene
SwissProt Q9N5E3 EMBL-EBI
WormBase CE36887 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:250459_AT nuclear matrix protein-related at
CANINE_2:CFAAFFX.28047.1.S1_S_AT similar to THO complex subunit 1 (Tho1) (Nuclear matrix protein p84) cfa
DROSOPHILA_2:1630542_AT dm
DROSGENOME1:155039_AT dm
CHICKEN:GGA.1237.1.S1_AT similar to THO complex subunit 1 (Tho1) (Nuclear matrix protein p84) gga
HG-U133A_2:204064_AT THO complex 1 hs
HG-U133A:204064_AT THO complex 1 hs
HG-U133_PLUS_2:204064_AT THO complex 1 hs
HG-FOCUS:204064_AT THO complex 1 hs
HUGENEFL:L36529_AT THO complex 1 hs
U133_X3P:G4826881_3P_AT THO complex 1 hs
HG-U95AV2:40242_AT THO complex 1 hs
HU35KSUBB:RC_N75808_AT THO complex 1 hs
HU35KSUBC:RC_AA258800_AT THO complex 1 hs
HU35KSUBC:RC_AA063546_AT THO complex 1 hs
U133_X3P:HS.1540.1.S1_3P_AT THO complex 1 hs
HG-U133_PLUS_2:226567_AT THO complex 1 hs
HG-U133B:226567_AT THO complex 1 hs
HG-U95B:43660_AT THO complex 1 hs
HG-U95B:44242_AT THO complex 1 hs
HG-U133_PLUS_2:222308_X_AT THO complex 1 hs
HG-U133A_2:222308_X_AT THO complex 1 hs
HG-U133A:222308_X_AT THO complex 1 hs
HG-U95B:49654_AT THO complex 1 hs
HU35KSUBC:RC_N62468_AT THO complex 1 hs
MOE430A:1424641_A_AT THO complex 1 mm
MOUSE430A_2:1424641_A_AT THO complex 1 mm
MOUSE430_2:1424641_A_AT THO complex 1 mm
MOUSE430_2:1420042_AT THO complex 1 mm
MOE430A:1420042_AT THO complex 1 mm
MOUSE430A_2:1420042_AT THO complex 1 mm
MOUSE430_2:1420043_S_AT THO complex 1 mm
MOE430A:1420043_S_AT THO complex 1 mm
MOUSE430A_2:1420043_S_AT THO complex 1 mm
MG-U74BV2:114608_AT THO complex 1 mm
MG-U74CV2:129640_AT THO complex 1 mm
MOE430A:1424642_AT THO complex 1 mm
MOUSE430A_2:1424642_AT THO complex 1 mm
MOUSE430_2:1424642_AT THO complex 1 mm
MOE430B:1431044_AT THO complex 1 mm
MOUSE430_2:1431044_AT THO complex 1 mm
Protein Similarities
Method ID Description E-Value
blast AAF39962 Hypothetical protein T02H6.2 [Caenorhabditis elegans] ref|NP_493796.2| T02H6.2 [Caenorhabditis elegans] 0.0
blast CAE56499 Hypothetical protein CBG24217 [Caenorhabditis briggsae] 0.0
blast AAH54938 THO complex 1 [Danio rerio] ref|NP_958481.1| THO complex 1 [Danio rerio] 4.0E-77
Sequence
Target Sequence 
>C. ELEGANS:181381_AT
ggatcccgagcagcaagtcgaggagcagtataaacaaatcaacgatagcgcattccaatg
gcgagccgcccgtctcctaatgcacaaatctccgggatacgtgacaaaaaccgacacaaa
aaccgatccgacgactaatatcaaggaatttttggagagaaatatgtataatgcggcaaa
gaattttaatgaattcaaggaatcgatcgagaatcgtgagaaaaaggaggcagaagctcg
gaaaaaagtggaagaatcgctcaaaaggaagctcgattcgtcaaaagtgaagccaagcca
aacatcttctccgaacccctacacagatacaattctctcggatgagcatctcacccagtt
ggctcgagatttatcgaaatttaaatcaaatctcgcgaaatgctttggcacaaagctccc
cgccgatgacgtcaccagtgatgagaagatttgctttaaaattctcaaaagttgggctga
aaagaatgggagaagcgggcggagtctgttgaatac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATCCCGAGCAGCAAGTCGAGGAG 687 511 1455 Antisense
CGATAGCGCATTCCAATGGCGAGCC 421 247 1497 Antisense
GTCTCCTAATGCACAAATCTCCGGG 142 469 1526 Antisense
GACACAAAAACCGATCCGACGACTA 157 367 1567 Antisense
GAAGCCAAGCCAAACATCTTCTCCG 79 345 1743 Antisense
GAACCCCTACACAGATACAATTCTC 639 341 1767 Antisense
AATTCTCTCGGATGAGCATCTCACC 592 175 1785 Antisense
TCACCCAGTTGGCTCGAGATTTATC 28 627 1805 Antisense
AAATCTCGCGAAATGCTTTGGCACA 424 117 1842 Antisense
CGCCGATGACGTCACCAGTGATGAG 264 257 1875 Antisense
GAAGCGGGCGGAGTCTGTTGAATAC 600 341 1946 Antisense
Sequence Source Affymetrix Proprietary Database