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[181380_at]

Description W09C3.2 /REP_DB=WormBase Gene ID /WP=CE14746 /TR=P91531 /GB=AAC24411.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 05      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 26.4
(0.3)
A 		1.7
(-3)
A 		8.4
(-2.1)
A 		46.3
(3)
A 		45
B 33.4
(3)
A 		4.6
(-3)
A 		11.9
(-1.5)
A 		25
(1.3)
A 		29
C 4.9
(-3)
A 		9.9
(-2.2)
A 		7.9
(-2.5)
A 		40.5
(3)
A 		36
avr 21.6
(0) 		5.4
(-3) 		9.4
(-2.2) 		37.3
(3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 6.6
(-2.4)
A 		4.9
(-2.6)
A 		4.4
(-2.7)
A 		1.3
(-3)
A 		56.8
(2.8)
A 		59
(3)
A 		58
B 3.2
(-3)
A 		39
(2.3)
A 		43.8
(3)
A 		24.5
(0.1)
A 		34.9
(1.7)
A 		30
(1)
A 		41
C 7.1
(-3)
A 		11.3
(-2.5)
A 		21.3
(-1.2)
A 		26.4
(-0.6)
A 		45.7
(1.8)
A 		55.7
(3)
P 		49
avr 5.6
(-3) 		18.4
(-1.2) 		23.2
(-0.5) 		17.4
(-1.3) 		45.8
(2.7) 		48.2
(3) 		43
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 9.6
(3)
A 		0.4
(-3)
A 		2.2
(-1.8)
A 		6.8
(1.2)
A 		9
B 10.7
(3)
A 		1.1
(-3)
A 		2.8
(-1.9)
A 		5.3
(-0.4)
A 		10
C 1.6
(-3)
A 		2.8
(-1.6)
A 		2.8
(-1.6)
A 		6.8
(3)
A 		5
avr 7.3
(3) 		1.4
(-3) 		2.6
(-1.8) 		6.3
(2) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 1.2
(-2.7)
A 		1.8
(-2.5)
A 		1
(-2.8)
A 		0.3
(-3)
A 		17.2
(3)
A 		14.4
(2)
A 		17
B 1.1
(-3)
A 		13
(2.5)
A 		10.6
(1.4)
A 		6.5
(-0.5)
A 		14.2
(3)
A 		11.2
(1.6)
A 		13
C 2.6
(-3)
A 		3.4
(-2.7)
A 		5.4
(-2)
A 		5.3
(-2)
A 		14.8
(1.6)
A 		18.6
(3)
P 		16
avr 1.6
(-3) 		6.1
(-1) 		5.7
(-1.2) 		4
(-2) 		15.4
(3) 		14.7
(2.7) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181380_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.996
Sequence Type Exemplar sequence
Representative Public ID W09C3.2 NCBI
Target Description W09C3.2 /REP_DB=WormBase Gene ID /WP=CE14746 /TR=P91531 /GB=AAC24411.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059029(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059029 NCBI Caenorhabditis elegans W09C3.2 (W09C3.2) mRNA, complete cds. 11/11 None
SNAP00000028187 ENSEMBL cdna:SNAP chromosome:CEL140:I:4711429:4713447:1 11/11 None
GENEFINDER00000028193 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4711429:4713447:1 11/11 None
W09C3.2 ENSEMBL cdna:known chromosome:CEL140:I:4711429:4713447:1 gene:W09C3.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4711428-4713447(+) 89.44 100.0
Public Domain and Genome References
Gene Title
Ensembl W09C3.2
Entrez Gene 189310 Entrez gene
SwissProt P91531 EMBL-EBI
WormBase CE14746 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC24411 Hypothetical protein W09C3.2 [Caenorhabditis elegans] ref|NP_491430.1| W09C3.2 [Caenorhabditis elegans] 1.0E-136
blast AAC24411 Hypothetical protein W09C3.2 [Caenorhabditis elegans] ref|NP_491430.1| W09C3.2 [Caenorhabditis elegans] 1.0E-124
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491430.1 1 12-34
W09C3.2 1 12-34
SNAP00000028187 1 12-34
GENEFINDER00000028193 1 12-34
Sequence
Target Sequence 
>C. ELEGANS:181380_AT
gcaagaaagctccatccgtgaaagatgataagagttccaaacccgcgccaaaaaacccaa
gttgtgaacgtactctaatgaaaactcaaccattgtctgaagctcgatcgatctacgttg
gaacaggacagtcgacatatgaatcgaagccagaaaaaagtaatggtggatcgatttacg
ctacagctttacctgcaatagttccaccggatcaggttcaaaaagcttcttcaattcgta
aacctgctacagtgacacccgacaagtcaatcaaaaagtctgctagcagaaagaggtcgg
aaaaacaagaaatgcaacttgtccggtatgaattgacaccaaaaaagtcgaagaagtctg
caaaaataattcatcacgcagctcttcctccaaacatgatgaaaacttcttctaagccta
atccatctccatctaagaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAAGAAAGCTCCATCCGTGAAAGA 402 319 848 Antisense
GATGATAAGAGTTCCAAACCCGCGC 333 411 871 Antisense
CAACCATTGTCTGAAGCTCGATCGA 352 187 934 Antisense
GCTCGATCGATCTACGTTGGAACAG 561 299 949 Antisense
GGTGGATCGATTTACGCTACAGCTT 289 499 1012 Antisense
CAGCTTTACCTGCAATAGTTCCACC 118 205 1031 Antisense
ATAGTTCCACCGGATCAGGTTCAAA 261 21 1045 Antisense
AAGCTTCTTCAATTCGTAAACCTGC 178 149 1070 Antisense
TAAACCTGCTACAGTGACACCCGAC 612 637 1086 Antisense
GAAAACTTCTTCTAAGCCTAATCCA 437 355 1248 Antisense
GCCTAATCCATCTCCATCTAAGAAA 651 281 1263 Antisense
Sequence Source Affymetrix Proprietary Database