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[181379_at]

Description C08G5.1 /REP_DB=WormBase Gene ID /WP=CE19690 /TR=Q9TZL6 /GB=AAC67419.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 20      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 188
1 2 3 4 range
A 46.8
(-2.1)
A 		39.5
(-2.4)
A 		21.6
(-3)
A 		195.4
(3)
A 		174
B 53.3
(3)
A 		49.1
(2.4)
A 		31.8
(0.1)
A 		9.3
(-3)
A 		44
C 47.5
(0.8)
A 		70
(3)
A 		7.7
(-3)
A 		38.4
(-0)
A 		62
avr 49.2
(-0.1) 		52.9
(0.2) 		20.4
(-3) 		81
(3) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 66
(3)
A 		12
(-3)
A 		63.8
(2.8)
A 		49.6
(1.2)
A 		43.8
(0.5)
A 		37.1
(-0.2)
A 		54
B 45.1
(0.8)
A 		51
(3)
A 		35.2
(-3)
A 		46.2
(1.2)
A 		39
(-1.6)
A 		40.7
(-0.9)
A 		16
C 29.2
(0.8)
A 		43.6
(3)
A 		4.2
(-3)
A 		38
(2.1)
A 		33.4
(1.4)
A 		30.8
(1.1)
A 		39
avr 46.8
(3) 		35.5
(-2.5) 		34.4
(-3) 		44.6
(1.9) 		38.7
(-0.9) 		36.2
(-2.1) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 17
(-0)
A 		8.6
(-2.2)
A 		5.6
(-3)
A 		28.6
(3)
A 		23
B 17
(3)
A 		12.1
(1)
A 		7.4
(-0.8)
A 		2
(-3)
A 		15
C 15.7
(1.5)
A 		20.1
(3)
A 		2.7
(-3)
A 		6.5
(-1.7)
A 		17
avr 16.6
(3) 		13.6
(1.4) 		5.2
(-3) 		12.4
(0.8) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 12.2
(1.9)
A 		4.3
(-3)
A 		13.9
(3)
A 		12.6
(2.2)
A 		13.2
(2.6)
A 		9
(-0.1)
A 		10
B 15.7
(2.1)
A 		17
(3)
A 		8.5
(-3)
A 		12.2
(-0.4)
A 		15.9
(2.2)
A 		15.2
(1.7)
A 		9
C 10.8
(1.8)
A 		13.3
(3)
A 		1.1
(-3)
A 		7.6
(0.2)
A 		10.8
(1.8)
A 		10.3
(1.5)
A 		12
avr 12.9
(2.6) 		11.5
(1) 		7.8
(-3) 		10.8
(0.3) 		13.3
(3) 		11.5
(1) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181379_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4399
Sequence Type Exemplar sequence
Representative Public ID C08G5.1 NCBI
Target Description C08G5.1 /REP_DB=WormBase Gene ID /WP=CE19690 /TR=Q9TZL6 /GB=AAC67419.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061398(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061398 NCBI Caenorhabditis elegans C08G5.1 (C08G5.1) mRNA, complete cds. 9/11 None
C08G5.1 ENSEMBL cdna:known chromosome:CEL140:II:735689:738672:-1 gene:C08G5.1 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000029165 7/11 Cross Hyb Matching Probes None
GENEFINDER00000029177 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:735373-738536(-) 99.85 99.85
Public Domain and Genome References
Gene Title
Ensembl C08G5.1
Entrez Gene 182424 Entrez gene
SwissProt Q9TZL6 EMBL-EBI
WormBase CE36684 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC67419 Hypothetical protein C08G5.1 [Caenorhabditis elegans] ref|NP_493799.2| C08G5.1 [Caenorhabditis elegans] 0.0
blast AAB54272 Hypothetical protein R155.2 [Caenorhabditis elegans] ref|NP_497484.1| R155.2 [Caenorhabditis elegans] 0.0
blast AAK29873 Hypothetical protein Y22D7AR.2 [Caenorhabditis elegans] ref|NP_497449.1| Y22D7AR.2 [Caenorhabditis elegans] 1.0E-148
Protein Domains
Database ID Description E-Value
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 1.5E-32
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493799.2 2 34-56,786-808
C08G5.1 2 34-56,786-808
Sequence
Target Sequence 
>C. ELEGANS:181379_AT
gacatctccagatctttgatactgccgtgtattctgctgctttcgatagttctgccaagt
ttctgcaagcactggaatcttcatttactgaatatggcaagactctggctcagttgaaga
accccgaatcatccatcaccctgtggccattcattgctattggtgttattcttctgattc
ttctggctgctctcattttctttggtctcaaatggcacaagaaacagcggcagaaaaata
atgataacccaccacaagctctgagtagtggaagctgtgttgtgaatggagtgatgatca
aacattacaaggacgagcatggcatcgtggagggcagggtagcttcgccgttattgattg
gtgagtctcaagcttctcatttccaaaaaagtacttatgttgtcagcctacaaaataaaa
aaaacattgaatttgaaaattttcaatttaatttgtacgcttctcttttcggctttgatt
taca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACATCTCCAGATCTTTGATACTGC 124 371 2096 Antisense
TTGATACTGCCGTGTATTCTGCTGC 436 705 2111 Antisense
TTCTGCTGCTTTCGATAGTTCTGCC 565 693 2127 Antisense
ATATGGCAAGACTCTGGCTCAGTTG 13 23 2187 Antisense
GTTGAAGAACCCCGAATCATCCATC 145 437 2208 Antisense
AACCCACCACAAGCTCTGAGTAGTG 547 143 2341 Antisense
AGCATGGCATCGTGGAGGGCAGGGT 486 65 2411 Antisense
GGTAGCTTCGCCGTTATTGATTGGT 277 505 2433 Antisense
GATTGGTGAGTCTCAAGCTTCTCAT 483 435 2451 Antisense
TAATTTGTACGCTTCTCTTTTCGGC 292 635 2544 Antisense
CTTCTCTTTTCGGCTTTGATTTACA 337 221 2555 Antisense
Sequence Source Affymetrix Proprietary Database